Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU23_RS08220 Genome accession   NZ_CP148339
Coordinates   1574336..1574965 (-) Length   209 a.a.
NCBI ID   WP_123905989.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0422     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569336..1579965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU23_RS08205 (WHU23_08210) helD 1569578..1571632 (-) 2055 WP_000420536.1 DNA helicase IV -
  WHU23_RS08210 (WHU23_08215) yccF 1571755..1572201 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU23_RS08215 (WHU23_08220) yccS 1572211..1574373 (+) 2163 WP_000875041.1 YccS family putative transporter -
  WHU23_RS08220 (WHU23_08225) sxy/tfoX 1574336..1574965 (-) 630 WP_123905989.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU23_RS08225 (WHU23_08230) sulA 1575184..1575693 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU23_RS08230 (WHU23_08235) ompA 1576050..1577105 (+) 1056 WP_000750414.1 porin OmpA -
  WHU23_RS08235 (WHU23_08240) matP 1577180..1577632 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU23_RS08240 (WHU23_08245) ycbZ 1577818..1579578 (+) 1761 WP_000156509.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 9.2180

>NTDB_id=870463 WHU23_RS08220 WP_123905989.1 1574336..1574965(-) (sxy/tfoX) [Escherichia coli strain Z1323HEC0422]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRTCEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=870463 WHU23_RS08220 WP_123905989.1 1574336..1574965(-) (sxy/tfoX) [Escherichia coli strain Z1323HEC0422]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGACTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995