Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RA167_RS01820 Genome accession   NZ_CP132744
Coordinates   406250..407773 (-) Length   507 a.a.
NCBI ID   WP_076786046.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B13/HKI 0402     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401250..412773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA167_RS01795 (RA167_01805) - 402306..402944 (-) 639 WP_076786042.1 LON peptidase substrate-binding domain-containing protein -
  RA167_RS01800 (RA167_01810) rapZ 402969..403883 (-) 915 WP_076786043.1 RNase adapter RapZ -
  RA167_RS01805 (RA167_01815) hprK 403937..404905 (-) 969 WP_041754506.1 HPr(Ser) kinase/phosphatase -
  RA167_RS01810 (RA167_01820) - 405003..405458 (-) 456 WP_076786044.1 PTS sugar transporter subunit IIA -
  RA167_RS01815 (RA167_01825) raiA 405712..406062 (-) 351 WP_076786045.1 ribosome-associated translation inhibitor RaiA -
  RA167_RS01820 (RA167_01830) rpoN/rpoN1 406250..407773 (-) 1524 WP_076786046.1 RNA polymerase factor sigma-54 Machinery gene
  RA167_RS01825 (RA167_01835) lptB 407945..408724 (-) 780 WP_076786047.1 LPS export ABC transporter ATP-binding protein -
  RA167_RS01830 (RA167_01840) lptA 408721..409389 (-) 669 WP_076787652.1 lipopolysaccharide transport periplasmic protein LptA -
  RA167_RS01835 (RA167_01845) lptC 409453..410058 (-) 606 WP_076786048.1 LPS export ABC transporter periplasmic protein LptC -
  RA167_RS01840 (RA167_01850) - 410062..410592 (-) 531 WP_076786049.1 HAD family hydrolase -
  RA167_RS01845 (RA167_01855) - 410600..411583 (-) 984 WP_076786050.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55394.78 Da        Isoelectric Point: 5.1652

>NTDB_id=870458 RA167_RS01820 WP_076786046.1 406250..407773(-) (rpoN/rpoN1) [Mycetohabitans endofungorum strain B13/HKI 0402]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENEDDWIASPLRVAADGSLLPSQSSALPTGMAE
APAPVLGSANGVNGERAESAEPAAVDEYNGMNSDSGTDTASWNLDDYVRPGGTSDDDDMPPLQLHESTVSLREHLGAQLR
LTKASPRDRALVTFLIESLDDDGYLSASCDEILADLPAELEVDADELNAALALLHSFDPAGVGARSASECLKLQLLRLEP
SATRTLALEIVSNYLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKTSQGWQAEL
NREVVPRLRVNHLYANILRSNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQRSFFVHGEIAMRPLVLRE
IADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKTPLSDSRIAELLAEQ
GFVVARRTVAKYREALKIPAVSMRKSL

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=870458 RA167_RS01820 WP_076786046.1 406250..407773(-) (rpoN/rpoN1) [Mycetohabitans endofungorum strain B13/HKI 0402]
ATGAAAGCAAGCCTTCAACTCCGTCTATCGCAGCATCTGGCACTGACCCCGCAATTGCAGCAGTCGATTCGGCTACTGCA
GCTGTCGACGCTCGAATTGCAGCAGGAGGTCGCCACGGCGATCGCGCAAAATCCTTTACTGGAGAACGAGGACGACTGGA
TCGCGAGCCCGTTGCGGGTCGCCGCGGACGGCTCACTGTTGCCGTCGCAAAGCAGCGCGCTGCCCACCGGCATGGCCGAG
GCACCAGCACCGGTGCTCGGCAGCGCCAACGGCGTGAACGGCGAGCGCGCGGAAAGCGCGGAGCCGGCCGCCGTCGACGA
ATACAACGGCATGAACAGCGACAGCGGCACCGACACGGCGTCGTGGAATTTGGACGACTATGTGCGTCCCGGTGGCACCT
CCGACGACGACGACATGCCGCCGCTGCAGTTGCACGAATCCACGGTCAGCCTACGCGAGCATTTGGGCGCGCAATTGCGC
CTGACCAAGGCTAGCCCGCGCGACCGCGCGCTGGTCACGTTTCTGATCGAGTCGCTGGACGACGATGGCTACCTGAGCGC
GAGCTGCGACGAAATCCTCGCCGACTTGCCGGCCGAACTTGAGGTCGACGCCGATGAGTTGAACGCGGCGCTCGCGCTGC
TGCACAGCTTCGATCCGGCTGGGGTCGGGGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAATTGTTGCGGCTGGAGCCA
AGCGCCACGCGCACGCTGGCGCTGGAAATCGTGTCGAACTACCTGGAGTTGCTGGCGGCGCGCGACTTCACGCGTCTGCG
CAAGCACCTGAAGGCCAGCGACGACGCGCTGCGCGACGCGCATGCGCTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCCG
CGTACGGCAAGGCCGAGGCCGACTACGTGGTGCCGGACATCATCGTGAAGAAAACCTCACAGGGGTGGCAGGCGGAGTTG
AACCGCGAAGTCGTGCCGCGGCTGCGGGTCAACCACTTATACGCGAACATCCTGCGCAGCAACCGGGGTGACCCAGGCAG
CGGTTCGTTGCGCCAGCAACTGCAGGAAGCGCGCTGGCTGATCAAGAACATCCAGCAACGATTTGAAACGATTTTGCGCG
TCGCACAAGCAATCGTCGAGCGTCAGCGTAGTTTTTTCGTGCATGGCGAGATCGCGATGCGCCCCTTGGTTTTACGAGAA
ATTGCTGATACGCTGGGCTTGCATGAGTCGACCGTATCGCGGGTCACGACCGGGAAGTACATGCTGACGCCCTTTGGGAC
GCTCGAATTCAAGTACTTCTTTGGCTCGCACGTGTCGACCGATACGGGGGGCGCGGCGTCATCGACCGCGATCCGCGCGC
TCATCAAGCAACTGATAGGAGCCGAAGACCCGAAAACCCCTCTTTCAGACAGCCGCATCGCTGAACTGCTGGCCGAACAG
GGCTTCGTGGTCGCACGCCGAACTGTGGCGAAATATCGCGAAGCGCTGAAGATCCCGGCTGTTAGCATGCGTAAGTCGTT
ATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(350-505)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.431

100

0.688