Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RA166_RS11020 Genome accession   NZ_CP132741
Coordinates   2413286..2414809 (+) Length   507 a.a.
NCBI ID   WP_076786046.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B14/HKI 0403     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2408286..2419809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA166_RS10995 (RA166_11030) - 2409476..2410459 (+) 984 WP_076786050.1 KpsF/GutQ family sugar-phosphate isomerase -
  RA166_RS11000 (RA166_11035) - 2410467..2410997 (+) 531 WP_076786049.1 HAD family hydrolase -
  RA166_RS11005 (RA166_11040) lptC 2411001..2411606 (+) 606 WP_076786048.1 LPS export ABC transporter periplasmic protein LptC -
  RA166_RS11010 (RA166_11045) lptA 2411670..2412338 (+) 669 WP_076787652.1 lipopolysaccharide transport periplasmic protein LptA -
  RA166_RS11015 (RA166_11050) lptB 2412335..2413114 (+) 780 WP_076786047.1 LPS export ABC transporter ATP-binding protein -
  RA166_RS11020 (RA166_11055) rpoN/rpoN1 2413286..2414809 (+) 1524 WP_076786046.1 RNA polymerase factor sigma-54 Machinery gene
  RA166_RS11025 (RA166_11060) raiA 2414997..2415347 (+) 351 WP_076786045.1 ribosome-associated translation inhibitor RaiA -
  RA166_RS11030 (RA166_11065) ptsN 2415601..2416056 (+) 456 WP_076796362.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RA166_RS11035 (RA166_11070) hprK 2416154..2417122 (+) 969 WP_041754506.1 HPr(Ser) kinase/phosphatase -
  RA166_RS11040 (RA166_11075) rapZ 2417176..2418090 (+) 915 WP_076797278.1 RNase adapter RapZ -
  RA166_RS11045 (RA166_11080) - 2418115..2418753 (+) 639 WP_076786042.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55394.78 Da        Isoelectric Point: 5.1652

>NTDB_id=870452 RA166_RS11020 WP_076786046.1 2413286..2414809(+) (rpoN/rpoN1) [Mycetohabitans endofungorum strain B14/HKI 0403]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENEDDWIASPLRVAADGSLLPSQSSALPTGMAE
APAPVLGSANGVNGERAESAEPAAVDEYNGMNSDSGTDTASWNLDDYVRPGGTSDDDDMPPLQLHESTVSLREHLGAQLR
LTKASPRDRALVTFLIESLDDDGYLSASCDEILADLPAELEVDADELNAALALLHSFDPAGVGARSASECLKLQLLRLEP
SATRTLALEIVSNYLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKTSQGWQAEL
NREVVPRLRVNHLYANILRSNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQRSFFVHGEIAMRPLVLRE
IADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKTPLSDSRIAELLAEQ
GFVVARRTVAKYREALKIPAVSMRKSL

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=870452 RA166_RS11020 WP_076786046.1 2413286..2414809(+) (rpoN/rpoN1) [Mycetohabitans endofungorum strain B14/HKI 0403]
ATGAAAGCAAGCCTTCAACTCCGTCTATCGCAGCATCTGGCACTGACCCCGCAATTGCAGCAGTCGATTCGGCTACTGCA
GCTGTCGACGCTCGAATTGCAGCAGGAGGTCGCCACGGCGATCGCGCAAAATCCTTTACTGGAGAACGAGGACGACTGGA
TCGCGAGCCCGTTGCGGGTCGCCGCGGACGGCTCACTGTTGCCGTCGCAAAGCAGCGCGCTGCCCACCGGCATGGCCGAG
GCACCAGCACCGGTGCTCGGCAGCGCCAACGGCGTGAACGGCGAGCGCGCGGAAAGCGCGGAGCCGGCCGCCGTCGACGA
ATACAACGGCATGAACAGCGACAGCGGCACCGACACGGCGTCGTGGAATTTGGACGACTATGTGCGTCCCGGTGGCACCT
CCGACGACGACGACATGCCGCCGCTGCAGTTGCACGAATCCACGGTCAGCCTACGCGAGCATTTGGGCGCGCAGTTGCGC
CTGACCAAGGCTAGCCCGCGCGACCGCGCGCTGGTCACGTTTCTGATCGAGTCGCTGGACGACGATGGCTACCTGAGCGC
GAGCTGCGACGAAATCCTCGCCGACTTGCCGGCCGAACTTGAGGTCGACGCCGATGAGTTGAACGCGGCGCTCGCGCTGC
TGCACAGCTTCGATCCGGCTGGGGTCGGGGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAATTGTTGCGGCTGGAGCCA
AGCGCCACGCGCACGCTGGCGCTGGAAATCGTGTCGAACTACCTGGAGTTGCTGGCGGCGCGCGACTTCACGCGTCTGCG
CAAGCACCTGAAGGCCAGCGACGACGCGCTGCGCGACGCGCATGCGCTGATCCGCTCGCTCGAGCCGTTCCCCGGCGCCG
CGTACGGCAAGGCCGAGGCCGACTACGTGGTGCCGGACATCATCGTGAAGAAAACCTCACAGGGGTGGCAGGCGGAGTTG
AACCGCGAAGTCGTGCCGCGGCTGCGGGTCAACCACTTATACGCGAACATCCTGCGCAGCAACCGGGGTGACCCAGGCAG
CGGTTCGTTGCGCCAGCAACTGCAGGAAGCGCGCTGGCTGATCAAGAACATCCAGCAACGATTTGAAACGATTTTGCGCG
TCGCACAAGCAATCGTCGAGCGTCAGCGTAGTTTTTTCGTGCATGGCGAGATCGCGATGCGCCCCTTGGTTTTACGAGAA
ATTGCTGATACGCTGGGCTTGCATGAGTCGACCGTATCGCGGGTCACGACCGGGAAGTACATGCTGACGCCCTTTGGGAC
GCTCGAATTCAAGTACTTCTTTGGCTCGCACGTGTCGACCGATACGGGGGGCGCGGCGTCATCGACCGCGATCCGCGCGC
TCATCAAGCAACTGATAGGAGCCGAAGACCCGAAAACACCTCTTTCAGACAGCCGCATCGCTGAACTGCTGGCCGAACAG
GGCTTCGTGGTCGCACGCCGAACTGTGGCGAAATATCGCGAAGCGCTGAAGATTCCGGCTGTTAGCATGCGTAAGTCGTT
ATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(350-505)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.431

100

0.688