Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   K6J91_RS13180 Genome accession   NZ_AP024624
Coordinates   2523065..2523496 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2518065..2528496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J91_RS13130 (BsBEST3106_25100) sinI 2518259..2518432 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  K6J91_RS13135 (BsBEST3106_25110) sinR 2518466..2518801 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  K6J91_RS13140 (BsBEST3106_25120) tasA 2518894..2519679 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  K6J91_RS13145 (BsBEST3106_25130) sipW 2519743..2520315 (-) 573 WP_003246088.1 signal peptidase I SipW -
  K6J91_RS13150 (BsBEST3106_25140) tapA 2520299..2521060 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  K6J91_RS13155 (BsBEST3106_25150) yqzG 2521332..2521658 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  K6J91_RS13160 (BsBEST3106_25160) spoIITA 2521700..2521879 (-) 180 WP_003230176.1 YqzE family protein -
  K6J91_RS13165 (BsBEST3106_25170) comGG 2521950..2522324 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  K6J91_RS13170 (BsBEST3106_25180) comGF 2522325..2522708 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  K6J91_RS13175 (BsBEST3106_25190) comGE 2522734..2523081 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  K6J91_RS13180 (BsBEST3106_25200) comGD 2523065..2523496 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  K6J91_RS13185 (BsBEST3106_25210) comGC 2523486..2523782 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  K6J91_RS13190 (BsBEST3106_25220) comGB 2523796..2524833 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  K6J91_RS13195 (BsBEST3106_25230) comGA 2524820..2525890 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  K6J91_RS13200 (BsBEST3106_25240) corA 2526302..2527255 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=87039 K6J91_RS13180 WP_004398628.1 2523065..2523496(-) (comGD) [Bacillus subtilis strain BEST3106]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=87039 K6J91_RS13180 WP_004398628.1 2523065..2523496(-) (comGD) [Bacillus subtilis strain BEST3106]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment