Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU57_RS07890 Genome accession   NZ_CP148323
Coordinates   1645058..1645687 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain Z1323HEC0477     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640058..1650687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU57_RS07870 (WHU57_07870) ycbZ 1640459..1642219 (-) 1761 WP_000156502.1 Lon protease family protein -
  WHU57_RS07875 (WHU57_07875) matP 1642405..1642857 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  WHU57_RS07880 (WHU57_07880) ompA 1642935..1643975 (-) 1041 WP_001441917.1 porin OmpA -
  WHU57_RS07885 (WHU57_07885) sulA 1644331..1644840 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU57_RS07890 (WHU57_07890) sxy/tfoX 1645058..1645687 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU57_RS07895 (WHU57_07895) yccS 1645650..1647812 (-) 2163 WP_000875068.1 YccS family putative transporter -
  WHU57_RS07900 (WHU57_07900) yccF 1647822..1648268 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU57_RS07905 (WHU57_07905) helD 1648391..1650445 (+) 2055 WP_024223933.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=870148 WHU57_RS07890 WP_000839136.1 1645058..1645687(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0477]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=870148 WHU57_RS07890 WP_000839136.1 1645058..1645687(+) (sxy/tfoX) [Escherichia coli strain Z1323HEC0477]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99