Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU19_RS14795 Genome accession   NZ_CP148318
Coordinates   3047500..3048129 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323MEC0001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3042500..3053129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU19_RS14780 (WHU19_14780) helD 3042742..3044796 (-) 2055 WP_001350178.1 DNA helicase IV -
  WHU19_RS14785 (WHU19_14785) yccF 3044919..3045365 (+) 447 WP_001261236.1 YccF domain-containing protein -
  WHU19_RS14790 (WHU19_14790) yccS 3045375..3047537 (+) 2163 WP_000875008.1 YccS family putative transporter -
  WHU19_RS14795 (WHU19_14795) sxy/tfoX 3047500..3048129 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU19_RS14800 (WHU19_14800) sulA 3048348..3048857 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  WHU19_RS14805 (WHU19_14805) ompA 3049213..3050253 (+) 1041 WP_001518466.1 porin OmpA -
  WHU19_RS14810 (WHU19_14810) matP 3050329..3050781 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  WHU19_RS14815 (WHU19_14815) ycbZ 3050967..3052727 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=870002 WHU19_RS14795 WP_000839153.1 3047500..3048129(-) (sxy/tfoX) [Escherichia coli strain Z1323MEC0001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=870002 WHU19_RS14795 WP_000839153.1 3047500..3048129(-) (sxy/tfoX) [Escherichia coli strain Z1323MEC0001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1