Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU73_RS14815 Genome accession   NZ_CP148282
Coordinates   3021987..3022616 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323PEC0010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3016987..3027616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU73_RS14800 (WHU73_14800) helD 3017229..3019283 (-) 2055 WP_001295354.1 DNA helicase IV -
  WHU73_RS14805 (WHU73_14805) yccF 3019406..3019852 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU73_RS14810 (WHU73_14810) yccS 3019862..3022024 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WHU73_RS14815 (WHU73_14815) sxy/tfoX 3021987..3022616 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU73_RS14820 (WHU73_14820) sulA 3022835..3023344 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  WHU73_RS14825 (WHU73_14825) ompA 3023701..3024741 (+) 1041 WP_024238687.1 porin OmpA -
  WHU73_RS14830 (WHU73_14830) matP 3024817..3025269 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU73_RS14835 (WHU73_14835) ycbZ 3025455..3027215 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=869759 WHU73_RS14815 WP_000839153.1 3021987..3022616(-) (sxy/tfoX) [Escherichia coli strain Z1323PEC0010]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=869759 WHU73_RS14815 WP_000839153.1 3021987..3022616(-) (sxy/tfoX) [Escherichia coli strain Z1323PEC0010]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1