Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU34_RS07885 Genome accession   NZ_CP148277
Coordinates   1612774..1613403 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323PEC0011     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607774..1618403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU34_RS07865 (WHU34_07865) ycbZ 1608175..1609935 (-) 1761 WP_000156518.1 Lon protease family protein -
  WHU34_RS07870 (WHU34_07870) matP 1610121..1610573 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU34_RS07875 (WHU34_07875) ompA 1610649..1611689 (-) 1041 WP_024238687.1 porin OmpA -
  WHU34_RS07880 (WHU34_07880) sulA 1612046..1612555 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  WHU34_RS07885 (WHU34_07885) sxy/tfoX 1612774..1613403 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU34_RS07890 (WHU34_07890) yccS 1613366..1615528 (-) 2163 WP_000875061.1 YccS family putative transporter -
  WHU34_RS07895 (WHU34_07895) yccF 1615538..1615984 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU34_RS07900 (WHU34_07900) helD 1616107..1618161 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=869653 WHU34_RS07885 WP_000839153.1 1612774..1613403(+) (sxy/tfoX) [Escherichia coli strain Z1323PEC0011]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=869653 WHU34_RS07885 WP_000839153.1 1612774..1613403(+) (sxy/tfoX) [Escherichia coli strain Z1323PEC0011]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1