Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RA177_RS11140 Genome accession   NZ_CP132599
Coordinates   2218254..2219057 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain PL23A     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213254..2224057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS11125 (RA177_11140) - 2215458..2215694 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  RA177_RS11130 (RA177_11145) - 2215731..2216468 (-) 738 WP_306654180.1 glycerophosphodiester phosphodiesterase -
  RA177_RS11135 (RA177_11150) - 2216698..2217798 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  RA177_RS11140 (RA177_11155) spo0A 2218254..2219057 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  RA177_RS11145 (RA177_11160) spoIVB 2219342..2220619 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  RA177_RS11150 (RA177_11165) recN 2220820..2222553 (-) 1734 WP_025092992.1 DNA repair protein RecN Machinery gene
  RA177_RS11155 (RA177_11170) ahrC 2222587..2223036 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=869591 RA177_RS11140 WP_024422935.1 2218254..2219057(-) (spo0A) [Bacillus safensis strain PL23A]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=869591 RA177_RS11140 WP_024422935.1 2218254..2219057(-) (spo0A) [Bacillus safensis strain PL23A]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTAGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884