Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RA177_RS10190 Genome accession   NZ_CP132599
Coordinates   2046137..2046772 (+) Length   211 a.a.
NCBI ID   WP_024422774.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041137..2051772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS10150 (RA177_10165) - 2041321..2042439 (+) 1119 WP_306654115.1 NADH-dependent flavin oxidoreductase -
  RA177_RS10155 (RA177_10170) - 2042493..2042999 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  RA177_RS10160 (RA177_10175) - 2043169..2043588 (+) 420 WP_024422768.1 Hsp20/alpha crystallin family protein -
  RA177_RS10165 (RA177_10180) - 2043608..2044036 (-) 429 WP_306654117.1 YppG family protein -
  RA177_RS10170 (RA177_10185) - 2044145..2044525 (-) 381 WP_306654119.1 YppE family protein -
  RA177_RS10175 (RA177_10190) - 2044575..2044808 (-) 234 WP_224426684.1 DUF5446 family protein -
  RA177_RS10180 (RA177_10195) sspM 2045006..2045110 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  RA177_RS10185 (RA177_10200) - 2045134..2046090 (-) 957 WP_044333251.1 DUF2515 domain-containing protein -
  RA177_RS10190 (RA177_10205) recU 2046137..2046772 (+) 636 WP_024422774.1 Holliday junction resolvase RecU Machinery gene
  RA177_RS10195 (RA177_10210) - 2046792..2049509 (+) 2718 WP_306654122.1 PBP1A family penicillin-binding protein -
  RA177_RS10200 (RA177_10215) - 2049750..2050259 (-) 510 WP_306654124.1 YpoC family protein -
  RA177_RS10205 (RA177_10220) nth 2050256..2050918 (-) 663 WP_024422776.1 endonuclease III -
  RA177_RS10210 (RA177_10225) - 2050936..2051640 (-) 705 WP_024422777.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24333.64 Da        Isoelectric Point: 9.7224

>NTDB_id=869590 RA177_RS10190 WP_024422774.1 2046137..2046772(+) (recU) [Bacillus safensis strain PL23A]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFYFWERQK
KNGRKSISKDELMESGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=869590 RA177_RS10190 WP_024422774.1 2046137..2046772(+) (recU) [Bacillus safensis strain PL23A]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTACTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAATCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.762

95.735

0.706