Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RA177_RS07900 Genome accession   NZ_CP132599
Coordinates   1588189..1589091 (+) Length   300 a.a.
NCBI ID   WP_103132421.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1583189..1594091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS07880 (RA177_07890) - 1583852..1585591 (+) 1740 WP_216100369.1 glycosyltransferase -
  RA177_RS07885 (RA177_07895) - 1585588..1585863 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  RA177_RS07890 (RA177_07900) sucC 1586040..1587200 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  RA177_RS07895 (RA177_07905) sucD 1587223..1588125 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  RA177_RS07900 (RA177_07910) dprA 1588189..1589091 (+) 903 WP_103132421.1 DNA-processing protein DprA Machinery gene
  RA177_RS07905 (RA177_07915) topA 1589285..1591360 (+) 2076 WP_024424184.1 type I DNA topoisomerase -
  RA177_RS07910 (RA177_07920) trmFO 1591431..1592735 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA177_RS07915 (RA177_07925) xerC 1592798..1593715 (+) 918 WP_103132420.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34100.50 Da        Isoelectric Point: 8.8788

>NTDB_id=869585 RA177_RS07900 WP_103132421.1 1588189..1589091(+) (dprA) [Bacillus safensis strain PL23A]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLTQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRIPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=869585 RA177_RS07900 WP_103132421.1 1588189..1589091(+) (dprA) [Bacillus safensis strain PL23A]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACATATCGTTCAAGCCTATTTAACGCAAAACATTCACATG
ATTCCCATTACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAATTCCCTCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATGTATACCCAAAAGAGCATGT
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387