Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RA177_RS07055 Genome accession   NZ_CP132599
Coordinates   1421570..1421848 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain PL23A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416570..1426848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS07030 (RA177_07040) - 1416663..1416938 (-) 276 WP_024424743.1 hypothetical protein -
  RA177_RS07035 (RA177_07045) - 1417082..1418701 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  RA177_RS07040 (RA177_07050) - 1418739..1419971 (-) 1233 WP_024424744.1 aminopeptidase -
  RA177_RS07045 (RA177_07055) - 1420080..1420211 (-) 132 WP_003210922.1 protein YkpC -
  RA177_RS07050 (RA177_07060) mreBH 1420289..1421293 (-) 1005 WP_306655073.1 rod-share determining protein MreBH -
  RA177_RS07055 (RA177_07065) abrB 1421570..1421848 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RA177_RS07060 (RA177_07070) - 1421993..1423303 (+) 1311 WP_024426886.1 ATP-binding protein -
  RA177_RS07065 (RA177_07075) - 1423308..1424144 (+) 837 WP_306655075.1 gamma-glutamylcyclotransferase -
  RA177_RS07070 (RA177_07080) - 1424182..1424850 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  RA177_RS07075 (RA177_07085) ade 1425113..1426840 (+) 1728 WP_306655077.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=869584 RA177_RS07055 WP_024424746.1 1421570..1421848(+) (abrB) [Bacillus safensis strain PL23A]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=869584 RA177_RS07055 WP_024424746.1 1421570..1421848(+) (abrB) [Bacillus safensis strain PL23A]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543