Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RA177_RS06945 Genome accession   NZ_CP132599
Coordinates   1401605..1402177 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1396605..1407177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS06915 (RA177_06925) dapD 1396720..1397430 (+) 711 WP_008347987.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RA177_RS06920 (RA177_06930) - 1397513..1398643 (+) 1131 WP_185854369.1 N-acetyldiaminopimelate deacetylase -
  RA177_RS06925 (RA177_06935) - 1398694..1398936 (+) 243 WP_024424725.1 YkuS family protein -
  RA177_RS06930 (RA177_06940) - 1398959..1399768 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  RA177_RS06935 (RA177_06945) ahpA 1400041..1400583 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  RA177_RS06940 (RA177_06950) - 1400666..1401124 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  RA177_RS06945 (RA177_06955) rok 1401605..1402177 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  RA177_RS06950 (RA177_06960) - 1402226..1403143 (-) 918 WP_306655067.1 sigmaE regulated sporulation protein -
  RA177_RS06955 (RA177_06965) - 1403229..1403810 (+) 582 WP_076839470.1 molybdenum cofactor guanylyltransferase -
  RA177_RS06960 (RA177_06970) - 1403841..1404857 (+) 1017 WP_041108817.1 thiazole biosynthesis adenylyltransferase ThiF -
  RA177_RS06965 (RA177_06975) glp 1404867..1406144 (+) 1278 WP_041108819.1 gephyrin-like molybdotransferase Glp -
  RA177_RS06970 (RA177_06980) mobB 1406126..1406650 (+) 525 WP_041109736.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  RA177_RS06975 (RA177_06985) - 1406647..1407138 (+) 492 WP_041108821.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=869583 RA177_RS06945 WP_024426871.1 1401605..1402177(+) (rok) [Bacillus safensis strain PL23A]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=869583 RA177_RS06945 WP_024426871.1 1401605..1402177(+) (rok) [Bacillus safensis strain PL23A]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCTAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAACTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGTGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8