Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RA177_RS06820 Genome accession   NZ_CP132599
Coordinates   1381458..1381919 (-) Length   153 a.a.
NCBI ID   WP_306655052.1    Uniprot ID   -
Organism   Bacillus safensis strain PL23A     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376458..1386919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS06795 (RA177_06800) - 1377062..1377946 (+) 885 WP_247721838.1 cation diffusion facilitator family transporter -
  RA177_RS06800 (RA177_06805) - 1378011..1378163 (-) 153 WP_162842519.1 hypothetical protein -
  RA177_RS06805 (RA177_06810) - 1378465..1379004 (+) 540 WP_024424707.1 RDD family protein -
  RA177_RS06810 (RA177_06815) - 1379130..1380440 (+) 1311 WP_306655051.1 MFS transporter -
  RA177_RS06815 (RA177_06820) - 1380514..1381422 (+) 909 WP_024424709.1 chemotaxis protein -
  RA177_RS06820 (RA177_06825) kre 1381458..1381919 (-) 462 WP_306655052.1 YkyB family protein Regulator
  RA177_RS06825 (RA177_06835) - 1382448..1382624 (+) 177 WP_166644676.1 hypothetical protein -
  RA177_RS06830 (RA177_06840) - 1382752..1383669 (-) 918 WP_122631271.1 AraC family transcriptional regulator -
  RA177_RS06835 (RA177_06845) - 1383783..1384694 (+) 912 WP_283860047.1 DMT family transporter -
  RA177_RS06840 (RA177_06850) - 1384831..1385046 (-) 216 WP_024424712.1 hypothetical protein -
  RA177_RS06845 (RA177_06855) - 1385306..1386583 (-) 1278 WP_024426859.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17695.30 Da        Isoelectric Point: 10.2909

>NTDB_id=869582 RA177_RS06820 WP_306655052.1 1381458..1381919(-) (kre) [Bacillus safensis strain PL23A]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSFRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=869582 RA177_RS06820 WP_306655052.1 1381458..1381919(-) (kre) [Bacillus safensis strain PL23A]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTACACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATTTCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAACCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.325

100

0.758