Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RA177_RS05170 Genome accession   NZ_CP132599
Coordinates   1070416..1070994 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain PL23A     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065416..1075994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS05150 (RA177_05155) - 1065911..1067218 (-) 1308 Protein_955 globin-coupled sensor protein -
  RA177_RS05155 (RA177_05160) - 1067298..1068830 (-) 1533 WP_306654959.1 FAD-dependent oxidoreductase -
  RA177_RS05160 (RA177_05165) - 1068973..1069833 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  RA177_RS05165 (RA177_05170) - 1069890..1070126 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  RA177_RS05170 (RA177_05175) comK 1070416..1070994 (+) 579 WP_024425481.1 competence protein ComK Regulator
  RA177_RS05175 (RA177_05180) - 1071294..1071776 (+) 483 WP_216100215.1 hypothetical protein -
  RA177_RS05180 (RA177_05185) - 1071807..1073246 (-) 1440 WP_216100217.1 PLP-dependent aminotransferase family protein -
  RA177_RS05185 (RA177_05190) - 1073392..1074561 (+) 1170 WP_185854216.1 MFS transporter -
  RA177_RS05190 (RA177_05195) - 1074626..1074904 (+) 279 WP_185854523.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=869570 RA177_RS05170 WP_024425481.1 1070416..1070994(+) (comK) [Bacillus safensis strain PL23A]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=869570 RA177_RS05170 WP_024425481.1 1070416..1070994(+) (comK) [Bacillus safensis strain PL23A]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCAGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62