Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RA085_RS04615 Genome accession   NZ_CP132559
Coordinates   960043..960672 (+) Length   209 a.a.
NCBI ID   WP_002482846.1    Uniprot ID   A0A380HJV9
Organism   Staphylococcus saprophyticus strain SZ.YL11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 955043..965672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA085_RS04590 (RA085_04595) - 955892..956878 (-) 987 WP_002482841.1 aromatic acid exporter family protein -
  RA085_RS04595 (RA085_04600) map 957053..957805 (+) 753 WP_011302778.1 type I methionyl aminopeptidase -
  RA085_RS04600 (RA085_04605) - 957909..958295 (+) 387 WP_041079966.1 hypothetical protein -
  RA085_RS04605 (RA085_04610) liaF 958312..959013 (+) 702 WP_011302780.1 cell wall-active antibiotics response protein LiaF -
  RA085_RS04610 (RA085_04615) vraS 959010..960053 (+) 1044 WP_129303684.1 sensor histidine kinase Regulator
  RA085_RS04615 (RA085_04620) vraR 960043..960672 (+) 630 WP_002482846.1 response regulator transcription factor Regulator
  RA085_RS04620 (RA085_04625) - 960829..962001 (-) 1173 WP_002482847.1 YihY/virulence factor BrkB family protein -
  RA085_RS04625 (RA085_04630) - 962413..962697 (-) 285 WP_002482848.1 hypothetical protein -
  RA085_RS04630 (RA085_04635) - 962704..963168 (-) 465 WP_037538133.1 low molecular weight protein-tyrosine-phosphatase -
  RA085_RS04635 (RA085_04640) - 963303..963506 (+) 204 WP_002482850.1 DUF1128 family protein -
  RA085_RS04640 (RA085_04645) - 963520..964758 (+) 1239 WP_041079969.1 aminopeptidase -
  RA085_RS04645 (RA085_04650) - 964972..965493 (+) 522 WP_129303685.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23684.19 Da        Isoelectric Point: 4.6997

>NTDB_id=869476 RA085_RS04615 WP_002482846.1 960043..960672(+) (vraR) [Staphylococcus saprophyticus strain SZ.YL11]
MPIKVLFVDDHEMVRIGISSYLSTQSDIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMDGVEATEQVKKDLPNIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=869476 RA085_RS04615 WP_002482846.1 960043..960672(+) (vraR) [Staphylococcus saprophyticus strain SZ.YL11]
ATGCCGATTAAAGTATTATTTGTTGATGATCATGAAATGGTTCGAATAGGTATTTCTAGTTATTTATCCACACAATCTGA
TATAGATGTCGTAGGGGAAGGTAAGTCAGGAAAAGATGCAATCGAAAAAGCACATGAACTGAAACCGGACCTAATTTTAA
TGGATTTACTTATGGACGATATGGATGGTGTCGAAGCAACTGAACAAGTTAAAAAAGACTTGCCAAATATTAAAGTTGTC
ATGCTTACGAGTTATATTGAAGATAACGAAGTCTATCGTGCACTTGATTCCGGTGTAGATAGCTATATATTGAAAACAAC
AAGTGCTAGTGATATTGCTGAAGCGATTCGTAAGACTTACAATAATGAGTCAGTATTTGAAGCAGAAGTCCTAGTTAAAA
TGAGAAATAGGATGAAACAACGAGCTGAATTGTATGAAATGCTCACAGAACGTGAAATGGAGATTTTATTACTGATTGCT
AAAGGTTACTCTAACCAAGAGATTGCCAGCGCTTCACATATTACGATTAAAACAGTGAAAACGCATGTAAGTAATATCCT
AAGTAAATTAGAAGTTCAAGATAGAACTCAAGCCGTCATATATGCATTCCAGCACAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HJV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.952

100

0.9