Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RA083_RS04285 Genome accession   NZ_CP132557
Coordinates   896778..897494 (-) Length   238 a.a.
NCBI ID   WP_069838088.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain SZ.PL35w     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 891778..902494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA083_RS04265 (RA083_04275) - 892843..893067 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  RA083_RS04270 (RA083_04280) - 893213..894166 (+) 954 WP_002482778.1 LacI family DNA-binding transcriptional regulator -
  RA083_RS04275 (RA083_04285) - 894252..895736 (+) 1485 WP_041079874.1 sucrose-6-phosphate hydrolase -
  RA083_RS04280 (RA083_04290) - 895733..896701 (+) 969 WP_002482780.1 carbohydrate kinase -
  RA083_RS04285 (RA083_04295) agrA 896778..897494 (-) 717 WP_069838088.1 quorum-sensing response regulator AgrA Regulator
  RA083_RS04290 (RA083_04300) agrC 897507..898802 (-) 1296 WP_041079873.1 quorum-sensing sensor histidine kinase AgrC -
  RA083_RS04295 (RA083_04305) agrD 898828..899013 (-) 186 WP_306662556.1 cyclic lactone autoinducer peptide AgrD -
  RA083_RS04300 (RA083_04310) - 899016..899585 (-) 570 WP_041079872.1 accessory gene regulator AgrB -
  RA083_RS04305 (RA083_04315) - 900345..901130 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  RA083_RS04310 (RA083_04320) - 901301..901930 (-) 630 WP_069821659.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27878.64 Da        Isoelectric Point: 5.0875

>NTDB_id=869441 RA083_RS04285 WP_069838088.1 896778..897494(-) (agrA) [Staphylococcus saprophyticus strain SZ.PL35w]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVSFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=869441 RA083_RS04285 WP_069838088.1 896778..897494(-) (agrA) [Staphylococcus saprophyticus strain SZ.PL35w]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTCTTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.294

100

0.853