Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RAL98_RS00610 Genome accession   NZ_CP132544
Coordinates   95778..96494 (+) Length   238 a.a.
NCBI ID   WP_251518352.1    Uniprot ID   -
Organism   Staphylococcus sp. HKU1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 90778..101494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL98_RS00585 (RAL98_00585) - 91405..92034 (+) 630 WP_251942670.1 nitroreductase family protein -
  RAL98_RS00590 (RAL98_00590) - 92161..92946 (+) 786 WP_251518359.1 carbon-nitrogen family hydrolase -
  RAL98_RS00595 (RAL98_00595) - 93732..94301 (+) 570 WP_251518357.1 accessory gene regulator AgrB -
  RAL98_RS00600 (RAL98_00600) agrD 94304..94441 (+) 138 WP_251518356.1 cyclic lactone autoinducer peptide AgrD -
  RAL98_RS00605 (RAL98_00605) agrC 94470..95759 (+) 1290 WP_418128847.1 quorum-sensing sensor histidine kinase AgrC -
  RAL98_RS00610 (RAL98_00610) agrA 95778..96494 (+) 717 WP_251518352.1 quorum-sensing response regulator AgrA Regulator
  RAL98_RS00615 (RAL98_00615) - 96544..97509 (-) 966 WP_418128849.1 carbohydrate kinase family protein -
  RAL98_RS00620 (RAL98_00620) - 97472..98989 (-) 1518 WP_251518348.1 sucrose-6-phosphate hydrolase -
  RAL98_RS00625 (RAL98_00625) - 99081..100043 (-) 963 WP_251518346.1 LacI family DNA-binding transcriptional regulator -
  RAL98_RS00630 (RAL98_00630) - 100240..100464 (-) 225 WP_251518344.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27909.75 Da        Isoelectric Point: 4.9590

>NTDB_id=869370 RAL98_RS00610 WP_251518352.1 95778..96494(+) (agrA) [Staphylococcus sp. HKU1]
MKIFICEDDVKQRENMMSIINNYIMIEEKPMSIELATDDPYEVIETAKETSDIGCYFLDIQLNADINGIKLASEIRKFDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELQSRIIDCIETAEKRLNLLSKEDNVETIELKRGSNSVYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELHQLDDRFFRCHNSFVVNRHNIESIDSKNRIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=869370 RAL98_RS00610 WP_251518352.1 95778..96494(+) (agrA) [Staphylococcus sp. HKU1]
ATGAAGATTTTCATTTGTGAAGATGACGTAAAACAACGTGAGAATATGATGTCGATTATTAACAACTACATTATGATTGA
AGAAAAACCGATGTCTATTGAATTAGCAACAGACGACCCATATGAAGTCATCGAAACAGCTAAAGAAACAAGCGATATTG
GATGTTACTTTTTAGATATTCAACTGAATGCAGATATTAATGGCATCAAACTTGCTAGCGAAATTCGTAAGTTTGACCCT
GTCGGTAATATTATATTTGTAACGAGTCACAGCGAGCTTACTTACCTCACCTTCGTTTATAAAGTTGCCGCTATGGACTT
CATCTTTAAAGACGATCCTGATGAACTACAGTCAAGAATCATTGACTGTATTGAAACAGCGGAAAAACGTTTGAATCTAC
TTTCAAAAGAAGATAACGTGGAAACAATTGAGCTTAAAAGAGGAAGTAATTCAGTGTATGTTCAGTACGATGACGTCATG
TTCTTTGAATCCTCATCCAAATCTCATCGTCTTATCGCCCATCTAGATAATCGACAAATTGAATTTTATGGTAGTCTTAA
AGAATTACACCAGTTAGATGATCGCTTCTTTAGATGTCATAATAGTTTTGTAGTCAACAGACATAATATCGAATCAATTG
ATTCAAAAAACAGAATTGTATATTTCAAAAATAAAGAACATTGCTATGCTTCAGTAAGAAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.975

100

0.87