Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP50_RS03060 Genome accession   NZ_CP148264
Coordinates   584899..585282 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1322HCJ0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579899..590282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP50_RS03040 (WHP50_03040) - 579978..581912 (-) 1935 WP_012006667.1 ribonuclease R family protein -
  WHP50_RS03045 (WHP50_03045) ilvC 582031..583053 (+) 1023 WP_038813911.1 ketol-acid reductoisomerase -
  WHP50_RS03050 (WHP50_03050) - 583057..584139 (+) 1083 WP_052789501.1 divergent polysaccharide deacetylase family protein -
  WHP50_RS03055 (WHP50_03055) dprA 584129..584902 (+) 774 WP_002898548.1 DNA-processing protein DprA Machinery gene
  WHP50_RS03060 (WHP50_03060) dprB 584899..585282 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  WHP50_RS03065 (WHP50_03065) - 585311..586150 (+) 840 WP_079264574.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP50_RS03070 (WHP50_03070) msrA 586326..586823 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP50_RS03075 (WHP50_03075) ppa 586864..587382 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHP50_RS03080 (WHP50_03080) adk 587392..587970 (-) 579 WP_002872374.1 adenylate kinase -
  WHP50_RS03085 (WHP50_03085) aspS 587967..589718 (-) 1752 WP_002898557.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=869352 WHP50_RS03060 WP_002898550.1 584899..585282(+) (dprB) [Campylobacter jejuni strain Z1322HCJ0003]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=869352 WHP50_RS03060 WP_002898550.1 584899..585282(+) (dprB) [Campylobacter jejuni strain Z1322HCJ0003]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449