Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q5761_RS12075 Genome accession   NZ_CP132508
Coordinates   2944446..2945843 (-) Length   465 a.a.
NCBI ID   WP_135224566.1    Uniprot ID   -
Organism   Thermaerobacter composti strain Ins1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2939446..2950843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5761_RS12055 (Q5761_12085) - 2939912..2940478 (-) 567 WP_318750705.1 CarD family transcriptional regulator -
  Q5761_RS12060 (Q5761_12090) - 2940717..2941112 (+) 396 WP_135224563.1 DUF1573 domain-containing protein -
  Q5761_RS12065 (Q5761_12095) - 2941841..2942563 (-) 723 WP_318750706.1 phosphoadenylyl-sulfate reductase -
  Q5761_RS12070 (Q5761_12100) disA 2943184..2944251 (-) 1068 WP_135224565.1 DNA integrity scanning diadenylate cyclase DisA -
  Q5761_RS12075 (Q5761_12105) radA 2944446..2945843 (-) 1398 WP_135224566.1 DNA repair protein RadA Machinery gene
  Q5761_RS12080 (Q5761_12110) - 2946207..2948717 (-) 2511 WP_318750707.1 ATP-dependent Clp protease ATP-binding subunit -
  Q5761_RS12085 (Q5761_12115) - 2948740..2949813 (-) 1074 WP_318750708.1 protein arginine kinase -
  Q5761_RS12090 (Q5761_12120) - 2949827..2950378 (-) 552 WP_135225927.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 47987.43 Da        Isoelectric Point: 8.3637

>NTDB_id=869329 Q5761_RS12075 WP_135224566.1 2944446..2945843(-) (radA) [Thermaerobacter composti strain Ins1]
MPPRTVFACQACGHLSPKWMGRCPECGAWNTFVEERAAAPAAPGGRRGRGGLAGALAGAREPAEPIALRDVGAGEPPRLG
TGMAELDRVLGGGFVPGSVVLVGGDPGVGKSTLLLQVSQNLASQGLPVLYVTGEESAAQVRLRAQRLGALAPSLLVLPTT
DALAAAEAIGRYQPALAVIDSIQTLAHPEVGSAPGSVSQVRESAALLLAVAKRLPVVLVLVGHVTRAGTIAGPRVVEHMV
DAVLYFESPAHHAYRLLRAIKNRFGATHEIALFEMQDRGLAEVANPSARLLSERPRGAAGSAVVAAVEGTRPLLVEIQAL
VAPAPYGQPRRVATGLDLGRAALVMAVLDKRAGLHLGGCDVYLKVAGGVRVDEPALDLGLAVALASSHRDRPADSEAVIF
GELGLAGEVRSVQRVDERVREAQRLGFQRVILPRGNVTPALAAAAGGLELVPVGRVEEAIAAAVG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=869329 Q5761_RS12075 WP_135224566.1 2944446..2945843(-) (radA) [Thermaerobacter composti strain Ins1]
TTGCCCCCTCGCACCGTCTTCGCGTGCCAGGCGTGCGGCCACCTGAGCCCCAAGTGGATGGGCCGCTGCCCCGAGTGCGG
GGCGTGGAACACCTTCGTCGAGGAACGCGCCGCGGCGCCCGCCGCCCCCGGCGGGCGCCGCGGCCGGGGCGGGCTCGCGG
GCGCCCTGGCCGGCGCCCGCGAGCCCGCCGAGCCCATCGCCCTCCGGGACGTGGGCGCCGGCGAACCGCCGCGGCTGGGG
ACGGGCATGGCCGAGCTCGATCGGGTGCTGGGGGGCGGGTTCGTCCCGGGATCGGTGGTCCTGGTGGGCGGCGACCCTGG
GGTGGGCAAGTCGACCCTGCTCCTCCAGGTCTCCCAGAACCTGGCGTCCCAGGGGCTTCCCGTCCTCTACGTCACCGGCG
AGGAGTCGGCCGCCCAGGTGCGGCTGCGCGCCCAGCGGCTGGGGGCGCTGGCGCCGTCCCTCCTGGTGCTGCCCACCACC
GACGCCCTGGCGGCGGCGGAGGCCATCGGCCGGTACCAGCCGGCGCTGGCGGTCATCGACTCGATCCAGACCCTGGCCCA
CCCCGAGGTGGGGTCGGCCCCGGGCAGCGTCAGCCAGGTGCGGGAGAGCGCGGCCCTCCTGCTGGCGGTGGCCAAGCGGC
TGCCGGTGGTCCTGGTCCTGGTCGGGCACGTGACCCGGGCGGGGACCATCGCCGGGCCGCGGGTGGTCGAGCACATGGTG
GACGCCGTCCTCTACTTCGAGTCGCCGGCCCACCATGCCTACCGCCTGCTGCGGGCGATCAAGAACCGCTTCGGCGCCAC
CCACGAGATCGCCCTCTTCGAGATGCAGGACCGCGGCCTGGCGGAGGTGGCCAATCCCTCGGCGCGGCTCCTCTCGGAGC
GTCCGCGGGGGGCGGCGGGCTCGGCGGTGGTGGCGGCGGTGGAGGGCACGCGCCCCCTGCTGGTGGAGATCCAGGCGCTG
GTGGCGCCGGCGCCCTACGGGCAGCCGCGCCGGGTGGCCACCGGGCTGGACCTGGGGCGGGCGGCCCTGGTGATGGCCGT
GCTGGACAAGCGCGCGGGCCTGCACCTGGGCGGCTGCGACGTGTACCTCAAGGTGGCCGGCGGGGTGCGGGTGGACGAAC
CGGCCCTCGACCTGGGGCTGGCCGTGGCCCTGGCCTCCAGCCATCGCGATCGACCGGCGGACTCCGAGGCGGTGATCTTC
GGCGAGCTCGGCCTGGCGGGCGAGGTCCGCTCGGTCCAGCGGGTCGACGAGCGGGTCCGGGAGGCGCAGCGCCTGGGGTT
CCAGCGGGTGATCCTGCCGCGGGGCAACGTGACCCCGGCGCTGGCGGCCGCGGCGGGCGGCCTCGAGCTGGTGCCCGTCG
GGCGCGTCGAGGAGGCGATCGCGGCCGCCGTGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(369-436)

KaiC (ATPase)

(80-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.732

99.355

0.514
  radA Streptococcus pneumoniae Rx1

50.805

93.548

0.475
  radA Streptococcus pneumoniae D39

50.805

93.548

0.475
  radA Streptococcus pneumoniae R6

50.805

93.548

0.475
  radA Streptococcus pneumoniae TIGR4

50.805

93.548

0.475
  radA Streptococcus mitis NCTC 12261

50.805

93.548

0.475
  radA Streptococcus mitis SK321

50.805

93.548

0.475