Detailed information NTG0869316

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAN89_RS17530
• Genome accession: NZ_CP132507
• Coordinates: 3664467..3665663 (+)
• Length: 398 a.a.
• NCBI ID: WP_313867497.1
• Uniprot ID: -
• Organism: Rhodoferax mekongensis strain TBRC 17307
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3659467..3670663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAN89_RS17500 (RAN89_17500)	-	3659627..3659890 (-)	264	WP_313867492.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RAN89_RS17505 (RAN89_17505)	-	3659935..3660375 (-)	441	WP_313867493.1	universal stress protein	-
RAN89_RS17510 (RAN89_17510)	coaD	3660393..3660881 (-)	489	WP_313867494.1	pantetheine-phosphate adenylyltransferase	-
RAN89_RS17515 (RAN89_17515)	rsmD	3660922..3661551 (-)	630	WP_313867495.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RAN89_RS17520 (RAN89_17520)	-	3661580..3662932 (-)	1353	WP_313867496.1	pitrilysin family protein	-
RAN89_RS17525 (RAN89_17525)	-	3662957..3664264 (-)	1308	WP_313869431.1	pitrilysin family protein	-
RAN89_RS17530 (RAN89_17530)	pilA	3664467..3665663 (+)	1197	WP_313867497.1	signal recognition particle-docking protein FtsY	Machinery gene
RAN89_RS17535 (RAN89_17535)	-	3665736..3666935 (+)	1200	WP_313867498.1	ABC transporter substrate-binding protein	-
RAN89_RS17540 (RAN89_17540)	-	3667058..3667678 (+)	621	WP_313867499.1	OmpA family protein	-
RAN89_RS17545 (RAN89_17545)	-	3667693..3668577 (+)	885	WP_313867500.1	patatin-like phospholipase family protein	-
RAN89_RS17550 (RAN89_17550)	-	3668654..3669988 (+)	1335	WP_313867501.1	cache domain-containing protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 40899.80 Da
• Isoelectric Point: 5.1273

>NTDB_id=869316 RAN89_RS17530 WP_313867497.1 3664467..3665663(+) (pilA) [Rhodoferax mekongensis strain TBRC 17307]
MFSFFKKKFLSSSTPASEAVAPAVAPLADEVPAQASDAPAEAVSAPAASVTSPPSSTPAPPAPEPANAAPASTGWGSGSL
IGSALVAPIEIPEAPATPPERQKWLDKLKAGLGKTASSISGVFGGSQIDEALYEDLEGALLMADAGVAATQLLTDALRKK
VKATGVTHPTALKNILIAELTELLQPLQKPLVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLADSNASVLLAAADTFRAA
AREQLTVWADRNTVEIVSQEGGDPAAVSYDSVTAGKARGKDVVLIDTAGRLPTQLHLMEELKKIKRVIGKADGTAPHEVL
LVIDGNTGQNAVAQVKAFDDALGLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLDELETFNAREFAQALLA

Nucleotide

• Length: 1197 bp

>NTDB_id=869316 RAN89_RS17530 WP_313867497.1 3664467..3665663(+) (pilA) [Rhodoferax mekongensis strain TBRC 17307]
ATGTTCAGTTTTTTCAAAAAGAAATTCCTTTCTTCGTCCACTCCGGCCTCTGAGGCGGTAGCGCCAGCCGTTGCACCTTT
AGCAGACGAAGTACCGGCGCAGGCCTCCGATGCACCAGCAGAAGCGGTTAGCGCCCCCGCAGCGTCGGTCACAAGCCCCC
CCAGCTCTACCCCCGCCCCGCCCGCACCAGAACCGGCGAACGCGGCACCCGCCAGTACCGGCTGGGGCTCCGGCTCGCTG
ATCGGCAGCGCGCTGGTGGCGCCCATTGAAATTCCTGAGGCTCCGGCTACGCCGCCCGAACGCCAGAAGTGGCTGGACAA
ACTCAAGGCGGGCCTGGGCAAAACCGCCAGCAGCATCTCCGGCGTGTTCGGCGGCAGCCAGATCGATGAAGCCTTGTATG
AGGACCTGGAAGGCGCCTTGCTGATGGCCGACGCCGGCGTGGCCGCCACCCAGTTGTTGACGGACGCACTGCGAAAAAAG
GTCAAGGCTACCGGCGTGACCCACCCGACGGCCCTCAAGAACATCCTGATCGCCGAGCTGACCGAGCTGCTTCAGCCGCT
GCAAAAGCCGCTGGTGATCGGCGAGCACACGCCCACCGTCATCATGGTGGCAGGTGTGAACGGTGCAGGTAAAACCACCA
GCATCGGCAAGCTGACCAAGCACCTCGCCGACAGCAACGCCAGCGTGTTGCTGGCCGCGGCCGACACCTTCCGCGCCGCT
GCGCGCGAGCAACTCACCGTGTGGGCCGACCGAAACACCGTAGAAATCGTGAGCCAGGAAGGCGGCGACCCCGCTGCCGT
GAGCTATGACTCGGTGACCGCCGGCAAGGCACGCGGCAAGGACGTGGTGCTCATCGACACCGCAGGTCGCCTGCCTACGC
AACTGCACCTGATGGAAGAGCTGAAAAAGATCAAGCGCGTCATCGGCAAAGCCGACGGCACGGCTCCGCACGAAGTGCTG
CTGGTCATCGACGGCAACACCGGCCAGAACGCCGTGGCCCAGGTCAAAGCATTTGACGACGCGCTAGGCCTTACCGGCCT
GATTGTCACCAAGCTCGACGGCACCGCCAAGGGCGGCGTGCTCGCAGCCATCGCCCGCGAGCGGCCCATTCCGGTGTACT
TCATCGGTGTGGGCGAAAAGCTCGACGAGCTGGAAACCTTCAACGCGCGGGAATTTGCGCAGGCCTTGTTGGCTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (198-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (117-180)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.882	100	0.533