Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RAN89_RS05890 Genome accession   NZ_CP132507
Coordinates   1244423..1244815 (+) Length   130 a.a.
NCBI ID   WP_313869350.1    Uniprot ID   -
Organism   Rhodoferax mekongensis strain TBRC 17307     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239423..1249815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAN89_RS05870 (RAN89_05870) - 1241143..1241736 (+) 594 WP_313868677.1 SIS domain-containing protein -
  RAN89_RS05875 (RAN89_05875) hemL 1241818..1243119 (-) 1302 WP_313868678.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RAN89_RS05880 (RAN89_05880) - 1243134..1244057 (-) 924 WP_313868679.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RAN89_RS05885 (RAN89_05885) - 1244199..1244351 (+) 153 WP_250644829.1 rubredoxin -
  RAN89_RS05890 (RAN89_05890) pilG 1244423..1244815 (+) 393 WP_313869350.1 response regulator Regulator
  RAN89_RS05895 (RAN89_05895) - 1244815..1245180 (+) 366 WP_313868680.1 response regulator -
  RAN89_RS05900 (RAN89_05900) - 1245192..1245722 (+) 531 WP_313868681.1 chemotaxis protein CheW -
  RAN89_RS05905 (RAN89_05905) - 1245743..1248004 (+) 2262 WP_313868682.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14295.56 Da        Isoelectric Point: 7.8522

>NTDB_id=869308 RAN89_RS05890 WP_313869350.1 1244423..1244815(+) (pilG) [Rhodoferax mekongensis strain TBRC 17307]
MTAPTFKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKVNDYQPHMIFCDILMPRLDGYQTCAIIKRNAKFSGV
PVVMLSSKDGVFDKARGRMVGAQDYLTKPFTKDQLLQAVQQFGAALQGAA

Nucleotide


Download         Length: 393 bp        

>NTDB_id=869308 RAN89_RS05890 WP_313869350.1 1244423..1244815(+) (pilG) [Rhodoferax mekongensis strain TBRC 17307]
ATGACCGCCCCCACCTTTAAAGTCCTGGTGATTGACGACAGCAACACCATACGGCGTAGCGCGGAAATCTTTCTCAAGCA
GGGCGGGCATGAAGTCTTGCTTGCTGAGGACGGGTTTGATGCTTTGGCCAAAGTCAATGATTACCAGCCGCACATGATCT
TCTGCGACATCCTGATGCCGCGCTTGGATGGTTACCAGACCTGCGCCATCATCAAACGCAACGCCAAATTTTCCGGGGTG
CCTGTCGTGATGCTGTCTTCCAAGGATGGCGTCTTTGACAAAGCGCGCGGCCGCATGGTGGGCGCGCAAGATTACCTCAC
CAAACCATTCACCAAAGACCAATTGCTGCAGGCTGTACAGCAATTCGGTGCTGCATTGCAAGGAGCCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.12

90

0.523