Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RAN89_RS00890 Genome accession   NZ_CP132507
Coordinates   193782..195380 (-) Length   532 a.a.
NCBI ID   WP_313867821.1    Uniprot ID   -
Organism   Rhodoferax mekongensis strain TBRC 17307     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188782..200380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAN89_RS00875 (RAN89_00875) - 189319..192090 (+) 2772 WP_313867818.1 PAS domain S-box protein -
  RAN89_RS00880 (RAN89_00880) - 192099..192518 (-) 420 WP_313867819.1 putative toxin-antitoxin system toxin component, PIN family -
  RAN89_RS00885 (RAN89_00885) - 192511..193785 (-) 1275 WP_313867820.1 THUMP domain-containing protein -
  RAN89_RS00890 (RAN89_00890) rpoN/rpoN1 193782..195380 (-) 1599 WP_313867821.1 RNA polymerase factor sigma-54 Machinery gene
  RAN89_RS00895 (RAN89_00895) lptB 195496..196272 (-) 777 WP_313867822.1 LPS export ABC transporter ATP-binding protein -
  RAN89_RS00900 (RAN89_00900) lptA 196269..196874 (-) 606 WP_313867823.1 lipopolysaccharide transport periplasmic protein LptA -
  RAN89_RS00905 (RAN89_00905) - 196949..197881 (-) 933 WP_313867824.1 exopolyphosphatase -
  RAN89_RS00910 (RAN89_00910) - 197980..198636 (-) 657 WP_313867825.1 thiol:disulfide interchange protein DsbA/DsbL -
  RAN89_RS00915 (RAN89_00915) - 198697..199368 (-) 672 WP_313867826.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58796.37 Da        Isoelectric Point: 4.7249

>NTDB_id=869300 RAN89_RS00890 WP_313867821.1 193782..195380(-) (rpoN/rpoN1) [Rhodoferax mekongensis strain TBRC 17307]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLELTEERAEREDFGLDAVDAPVSDGDRLSEEADF
APHSIADYASSTSASSSNEDETTPLSGSDEPDWEGDGTTEMTPDDGEWGVDAKAKTNNLDDDEQKDATELARSGESLQSF
LHRQAAALRLSAEDAAALRFLIESLNDDGYLEDPLAELAQSLHPADEEQLHELVHHFTVALGLLHSLEPVGVGARDLGEC
LRLQLRALLTTADEDGELDRTEVLQVALAICKQPMELLARRDIKRLVQAGVGSDALVREAIALIARLEPKPGRRFMDVER
NIVVPDVLVVPIGKVGGMPKFRVQLNPDVMPRLKVHDIYANVLRNHKASSSHAGLQQRLQEARWFIKNIQQRFDTILRVS
TAIVERQKNFFTHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSGLGTESGGNASSTAVRALI
KQFIASESPKKPLSDNQISDMLKEQGIECARRTVAKYREGLKIAPASLRKAL

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=869300 RAN89_RS00890 WP_313867821.1 193782..195380(-) (rpoN/rpoN1) [Rhodoferax mekongensis strain TBRC 17307]
ATGAAGCAAGGATTGTCTTTACGCGTCTCGCAGCATCTGGCGCTCACCCCGCAGCTGCAACAATCCATCCGCTTGCTGCA
ACTCTCCACGCTGGAGCTCAGCCAGGAGGTGGAGCAGATGCTGGACGAAAACCCCTTCCTGGAGCTCACCGAAGAGCGTG
CTGAGCGGGAAGACTTTGGCCTGGATGCGGTGGATGCACCGGTGAGTGATGGAGACCGTCTATCCGAAGAGGCTGACTTT
GCTCCTCATTCGATAGCTGACTACGCAAGCAGTACAAGCGCTAGCAGCTCGAATGAGGATGAGACGACTCCGCTGTCCGG
CAGCGATGAACCCGACTGGGAGGGCGACGGCACCACTGAGATGACCCCCGACGACGGCGAATGGGGTGTGGATGCCAAAG
CCAAAACCAACAACCTGGACGACGACGAGCAGAAGGATGCGACCGAACTGGCACGTTCGGGCGAGTCTTTGCAGTCCTTT
CTGCACCGCCAAGCCGCCGCTTTGCGCTTGAGCGCCGAGGATGCGGCCGCACTGCGCTTCCTGATCGAGTCCCTCAACGA
CGACGGCTACCTGGAAGACCCGCTGGCCGAGCTAGCCCAGAGTCTGCACCCTGCCGACGAAGAGCAGCTCCACGAACTGG
TGCACCACTTCACTGTGGCATTGGGCCTGCTTCACAGCCTGGAACCGGTCGGTGTCGGTGCGCGTGACTTGGGTGAATGT
TTGCGCTTGCAACTGCGGGCATTGCTGACCACCGCGGATGAAGATGGCGAATTGGATCGCACTGAGGTACTGCAGGTGGC
TTTGGCCATTTGCAAGCAACCCATGGAACTGCTGGCCCGTCGCGACATCAAGCGCCTCGTGCAAGCAGGTGTGGGTAGCG
ATGCTCTGGTGCGCGAGGCCATTGCACTCATAGCCCGTCTGGAGCCCAAGCCCGGCCGCCGCTTTATGGATGTGGAGCGC
AATATCGTCGTGCCTGATGTGCTGGTGGTGCCCATCGGCAAGGTGGGCGGAATGCCCAAATTCCGGGTGCAACTGAATCC
GGATGTGATGCCGCGCCTCAAGGTGCACGACATTTACGCCAATGTGCTGCGCAACCACAAAGCCAGCTCCAGCCACGCCG
GTCTGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTTATCAAGAACATCCAACAGCGCTTTGACACCATCCTGCGCGTGAGC
ACAGCGATTGTGGAGCGTCAAAAAAACTTCTTCACCCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGAAATTGC
AGACGAACTGGGCTTGCATGAATCCACCATCAGCCGGGTGACCACTGCCAAATACATGGCGACGCCCTTCGGCACGTTTG
AGTTGAAGTACTTCTTCGGCTCCGGCCTGGGCACTGAGTCTGGCGGCAACGCCTCCAGCACGGCGGTGCGGGCGCTGATC
AAGCAGTTCATCGCTTCCGAGAGCCCGAAAAAGCCCTTGAGCGACAACCAGATTTCCGACATGCTCAAAGAGCAGGGCAT
TGAATGCGCCCGGCGCACCGTGGCCAAATACCGCGAGGGCCTGAAGATTGCCCCCGCCTCACTCCGCAAAGCGCTATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-530)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(148-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.504

100

0.515