Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LACZS2_RS01715 Genome accession   NZ_CP132485
Coordinates   352287..354086 (-) Length   599 a.a.
NCBI ID   WP_070650070.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 347287..359086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACZS2_RS01690 (LACZS2_000340) - 348552..348896 (+) 345 WP_010489774.1 hypothetical protein -
  LACZS2_RS01695 (LACZS2_000341) - 348970..349689 (+) 720 WP_039639686.1 metal ABC transporter ATP-binding protein -
  LACZS2_RS01700 (LACZS2_000342) - 349686..350483 (+) 798 WP_010489770.1 metal ABC transporter permease -
  LACZS2_RS01705 (LACZS2_000343) - 350564..351412 (-) 849 WP_093997946.1 metallophosphoesterase -
  LACZS2_RS01710 (LACZS2_000344) - 351409..352290 (-) 882 WP_010489767.1 NAD(P)-dependent oxidoreductase -
  LACZS2_RS01715 (LACZS2_000345) pepF 352287..354086 (-) 1800 WP_070650070.1 oligoendopeptidase F Regulator
  LACZS2_RS01720 (LACZS2_000346) - 354215..355309 (+) 1095 WP_070650069.1 LCP family protein -
  LACZS2_RS01725 (LACZS2_000347) brnQ 355475..356854 (-) 1380 WP_010489762.1 branched-chain amino acid transport system II carrier protein -
  LACZS2_RS01730 (LACZS2_000348) - 357488..358171 (-) 684 WP_070650068.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67326.34 Da        Isoelectric Point: 5.4341

>NTDB_id=869273 LACZS2_RS01715 WP_070650070.1 352287..354086(-) (pepF) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
MQHLPVREDVPTKLTWDLTTIYPNDAAWNADFEAVREQAKEAAALKGTLGNSADALITGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLTAWRDTESLKPFGHFIDAITVNRQHVLTTAAEALIAS
AGDALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVTLRKKVLGVDQLHMYDIYTPLTGKPPLTFTLDQA
KTEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSTYYADLNARYYGLDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=869273 LACZS2_RS01715 WP_070650070.1 352287..354086(-) (pepF) [Lacticaseibacillus zeae subsp. silagei strain NCIMB 15475]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACCTGGGATCTAACCACCATCTATCCAAATGATGCGGC
TTGGAACGCTGACTTTGAAGCTGTGCGCGAACAGGCTAAAGAAGCAGCCGCGCTCAAGGGAACTTTAGGCAATTCAGCCG
ATGCACTCATCACCGGCATCAAGGCGGTTTTAGCAGTCTTTCGACGATTTGAGAAAGTCTATGTTTATTCAAGCCTGAAA
AGCGATCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCCGAGAGCCTCGGTGCCGAACTTGCCAGTCA
GTTAGCCTTTTTGGATCCGGAGATTCTGGCAATTCCCGCAGACAAACTGACAGCATGGCGCGACACCGAAAGCCTCAAGC
CGTTTGGGCACTTTATTGATGCGATCACCGTTAATCGCCAACATGTGCTGACAACCGCAGCCGAGGCTCTGATTGCCAGT
GCCGGTGATGCGCTGAACGCCAGCCATGCTACTTTCAACGTCCTAGATAATTCCGACCTGCAATTCGGTTTCGTCGAAAA
TGAAGACGGCGAAACAGTGCAACTCAGTAACGGCTTGTATGGCCAGTTGATTCGCTCAACTCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACGCTGAGCGGCCAAGTCAAGGCG
CACAACTTTAATGCCAAAGCCCATCATTACGCCAATGCCCGCGCGGCGGCAATGGCAAGTAATCATATTCCAGAAAGTGT
TTATACGACCCTCATCGACCAGGTCAACACCCATCTGCCGCTTCTGCATCGTTATGTCACATTGCGGAAAAAAGTCCTGG
GCGTCGATCAATTGCACATGTATGACATCTACACCCCGTTGACCGGCAAGCCGCCATTGACCTTCACGCTTGACCAAGCA
AAAACTGAAGCATTGAAAGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTTGACAACCGCTA
CATTGATGTCGTCGAAAATAAAGGCAAACGTTCCGGCGCTTATTCAGGTGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGACGAACTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAACCAGCCTTATGTGTATGGCGATTACCCGATTTTTGTTGCCGAAATTGCGTCAACGACCAACGAAAATCTGCTCAC
CGATTACTTCCTGACCCACACGGATGACCCCAAGGTACGCGCCTACATCCTGAATTACTATCTCGATGGCTTTAAAGGTA
CCGTCTTCCGCCAGACGCAATTTGCCGAATTTGAACACTGGATTCATCAGCAGGACCAACAAGGCGAGCCACTCACGGCA
ACCAGTATGTCAACATACTACGCCGATCTCAATGCCCGGTATTATGGACTGGATGTTGCCCGCGATCCCGAAATTGCCTT
CGAATGGGCACGAATCCCGCATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGTTTTGCCGCAGCATCAACGC
TAGCTGCCGGCATTAGCAGCGGCGAACCCAACGCCGCGTCCCGCTACTTGGACTATTTAAAGTCAGGCAGCTCGCAATAT
GCCATCGATACCATGAAAACCGCTGGCGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCAATGTTTGAAAA
ACGGTTAACGGAATTGGAAGAACTTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.862

99.165

0.524