Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LACPH_RS10875 Genome accession   NZ_CP132482
Coordinates   2332723..2334087 (-) Length   454 a.a.
NCBI ID   WP_010492253.1    Uniprot ID   A0AAD1ETX9
Organism   Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2327723..2339087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPH_RS10855 (LACPH_002170) - 2328625..2329401 (-) 777 WP_306387710.1 ABC transporter permease -
  LACPH_RS10860 (LACPH_002171) - 2329427..2330305 (-) 879 WP_306386918.1 ATP-binding cassette domain-containing protein -
  LACPH_RS10865 (LACPH_002172) - 2330586..2331482 (+) 897 WP_306386919.1 Rgg/GadR/MutR family transcriptional regulator -
  LACPH_RS10870 (LACPH_002173) - 2331587..2332702 (-) 1116 WP_010492251.1 PIN/TRAM domain-containing protein -
  LACPH_RS10875 (LACPH_002174) radA 2332723..2334087 (-) 1365 WP_010492253.1 DNA repair protein RadA Machinery gene
  LACPH_RS10880 (LACPH_002175) - 2334107..2334646 (-) 540 WP_025013302.1 dUTP diphosphatase -
  LACPH_RS10885 (LACPH_002176) - 2334913..2335203 (+) 291 WP_025013303.1 GNAT family N-acetyltransferase -
  LACPH_RS10890 (LACPH_002177) - 2335638..2336957 (+) 1320 WP_306386920.1 aminopeptidase C -
  LACPH_RS10895 (LACPH_002178) - 2337088..2338434 (+) 1347 WP_306386921.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49051.51 Da        Isoelectric Point: 8.0456

>NTDB_id=869200 LACPH_RS10875 WP_010492253.1 2332723..2334087(-) (radA) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRAGSKVKPMRMDEVTVAKETRVKTGLAELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEGVI
DQMQPDYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEV
RRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=869200 LACPH_RS10875 WP_010492253.1 2332723..2334087(-) (radA) [Lacticaseibacillus parahuelsenbergensis strain NCIMB 15471]
ATGGCGAAAGCAAAAACACAGTACGTATGTCAAAATTGTGGTTATATTTCAGCCACTTATTTAGGGCGCTGTCCGAATTG
CGGTGGTTGGAATACGTTGGTTGAAGAAACCGTCAGTTCAACCAAGTCGGCACCGCGGCAGACGCGGGCAGGCAGTAAAG
TCAAGCCGATGCGGATGGATGAAGTGACGGTTGCCAAGGAAACGCGGGTTAAGACCGGTCTGGCGGAATTAAACCGTGTG
CTTGGTGGCGGCGTGGTGCCGGGATCGCTGGTTTTGATTGGCGGGGATCCCGGAATCGGTAAATCAACCTTGCTATTGCA
GGTGTCCGGACAGTTAGCGAGCACTGGCGGTACCGTTTTATACGTGTCCGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GTGCCGGGCGCTTAGGGGTTGCCAATTCGGGGATGTACCTGTATCCGGAAACCGACATGCCCAGCATTGAAGGTGTTATT
GACCAGATGCAGCCGGATTATGTCGTGATTGACTCGGTTCAAACCATGAATGTACCGGATATGAACTCGGCAGTCGGTTC
GGTTGCCCAGATTCGCGAAGTCACGGCCGAACTGATGCGCATTGCCAAATCCAAAGGTGTAACCATCTTCATCGTCGGCC
ACGTCACCAAGGAAGGCGCGATTGCCGGCCCTAAAATTCTTGAGCATATGGTCGACACCGTGCTTTATTTTGAAGGCGAT
ATGCACCACACTTACCGGATTTTACGGTCGGTTAAGAATCGGTTCGGCTCCACCAATGAAATCGGCATTTTTGAGATGCA
CCAAAATGGCCTGCAGGAAGTCGCCAATCCCTCGGAAATCTTCTTAGAGGAACGGCTGGCTGGGGCGACCGGTTCGGCGG
TGGTGGTATCGATGGAAGGCACGCGACCGATTTTGGTGGAAATCCAGGCCCTGATCAGCCCCACAATGTACGGCAATGCC
AAACGTACTAGCAGCGGATTGGATCATAATCGCGTCAGCTTAATTATGGCGGTGCTGGAAAAGCGCGCCAATCTCATGCT
GCAGAATCAGGACGCTTACCTGAAAGCCACTGGCGGCGTTAAGTTGGATGAGCCGGCGATTGACTTAGCGATGGCCGTTG
CGATTGCCTCGTCATATCGCGACAAAGAGATTCCGCCGACGGATTGTTTTGTCGGTGAAATCGGCCTGACCGGTGAAGTG
CGCCGGGTGAACCGCATTGAAGATCGGGTCAAAGAGGCGGCCAAGCTAGGTTTTAAGCGGATTTTCGTGCCGCGTAACAA
CCTGCAAGGCTGGCACGCGCCCAAAGATATTCAAGTCATTGGGGTTACAAGCATTGCCGAAGCGTTGCATAAGGTTTTTA
ATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.433

99.78

0.683
  radA Streptococcus pneumoniae Rx1

68.433

99.78

0.683
  radA Streptococcus pneumoniae D39

68.433

99.78

0.683
  radA Streptococcus pneumoniae R6

68.433

99.78

0.683
  radA Streptococcus pneumoniae TIGR4

68.433

99.78

0.683
  radA Streptococcus mitis SK321

68.212

99.78

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.654