Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ09_RS03425 Genome accession   NZ_CP148259
Coordinates   642967..643350 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1322HCJ0017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 637967..648350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ09_RS03405 (WHQ09_03405) - 638046..639980 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  WHQ09_RS03410 (WHQ09_03410) ilvC 640099..641121 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ09_RS03415 (WHQ09_03415) - 641125..642207 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  WHQ09_RS03420 (WHQ09_03420) dprA 642197..642970 (+) 774 WP_002852253.1 DNA-processing protein DprA Machinery gene
  WHQ09_RS03425 (WHQ09_03425) dprB 642967..643350 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ09_RS03430 (WHQ09_03430) - 643379..644218 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ09_RS03435 (WHQ09_03435) msrA 644395..644892 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ09_RS03440 (WHQ09_03440) ppa 644934..645452 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHQ09_RS03445 (WHQ09_03445) adk 645462..646040 (-) 579 WP_002852182.1 adenylate kinase -
  WHQ09_RS03450 (WHQ09_03450) aspS 646037..647788 (-) 1752 WP_002852289.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=869121 WHQ09_RS03425 WP_002852281.1 642967..643350(+) (dprB) [Campylobacter jejuni strain Z1322HCJ0017]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=869121 WHQ09_RS03425 WP_002852281.1 642967..643350(+) (dprB) [Campylobacter jejuni strain Z1322HCJ0017]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449