Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RAM45_RS06705 | Genome accession | NZ_CP132393 |
| Coordinates | 1402268..1403242 (+) | Length | 324 a.a. |
| NCBI ID | WP_014613820.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain CUVET17-450 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1397268..1408242
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RAM45_RS06670 (RAM45_06620) | rpmG | 1397653..1397817 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| RAM45_RS06675 (RAM45_06625) | - | 1397969..1398508 (+) | 540 | WP_203160814.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| RAM45_RS06680 (RAM45_06630) | - | 1398527..1399966 (+) | 1440 | WP_203200851.1 | rhomboid family intramembrane serine protease | - |
| RAM45_RS06685 (RAM45_06635) | - | 1399968..1400171 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| RAM45_RS06690 (RAM45_06640) | - | 1400168..1401154 (+) | 987 | WP_014613817.1 | ROK family glucokinase | - |
| RAM45_RS06695 (RAM45_06645) | - | 1401155..1401466 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| RAM45_RS06700 (RAM45_06650) | - | 1401479..1402108 (+) | 630 | WP_096535719.1 | MBL fold metallo-hydrolase | - |
| RAM45_RS06705 (RAM45_06655) | comGA | 1402268..1403242 (+) | 975 | WP_014613820.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RAM45_RS06710 (RAM45_06660) | comGB | 1403211..1404278 (+) | 1068 | WP_015729166.1 | competence type IV pilus assembly protein ComGB | - |
| RAM45_RS06715 (RAM45_06665) | comGC | 1404291..1404614 (+) | 324 | WP_015729165.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RAM45_RS06720 (RAM45_06670) | comGD | 1404592..1405032 (+) | 441 | WP_015729164.1 | competence type IV pilus minor pilin ComGD | - |
| RAM45_RS06725 (RAM45_06675) | - | 1405137..1405337 (+) | 201 | WP_238402310.1 | hypothetical protein | - |
| RAM45_RS06730 (RAM45_06680) | - | 1405243..1405728 (+) | 486 | WP_080552896.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RAM45_RS06735 (RAM45_06685) | - | 1405892..1406419 (+) | 528 | WP_140241608.1 | shikimate kinase | - |
| RAM45_RS06740 (RAM45_06690) | gcvT | 1406577..1407668 (+) | 1092 | WP_015729161.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36846.58 Da Isoelectric Point: 7.5584
>NTDB_id=869024 RAM45_RS06705 WP_014613820.1 1402268..1403242(+) (comGA) [Staphylococcus pseudintermedius strain CUVET17-450]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=869024 RAM45_RS06705 WP_014613820.1 1402268..1403242(+) (comGA) [Staphylococcus pseudintermedius strain CUVET17-450]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAATGGCATTACACAAATTTCCGTTAATGAAAAAGCTGATATTACGTA
TGGATCATCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGCGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAATGGCATTACACAAATTTCCGTTAATGAAAAAGCTGATATTACGTA
TGGATCATCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGCGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.514 |
99.691 |
0.583 |
| comGA | Staphylococcus aureus N315 |
58.514 |
99.691 |
0.583 |