Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RAM45_RS04120 Genome accession   NZ_CP132393
Coordinates   930605..931321 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET17-450     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 925605..936321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM45_RS04105 (RAM45_04070) - 927110..928057 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  RAM45_RS04110 (RAM45_04075) - 928113..929597 (+) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  RAM45_RS04115 (RAM45_04080) - 929601..930545 (+) 945 WP_063278587.1 carbohydrate kinase family protein -
  RAM45_RS04120 (RAM45_04085) agrA 930605..931321 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  RAM45_RS04125 (RAM45_04090) agrC 931335..932627 (-) 1293 WP_065354126.1 quorum-sensing sensor histidine kinase AgrC -
  RAM45_RS04130 (RAM45_04095) agrD 932651..932788 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  RAM45_RS04135 (RAM45_04100) - 932790..933356 (-) 567 WP_014613414.1 accessory gene regulator AgrB -
  RAM45_RS04140 - 933748..933825 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  RAM45_RS04145 (RAM45_04105) - 934113..934916 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=869012 RAM45_RS04120 WP_037542586.1 930605..931321(-) (agrA) [Staphylococcus pseudintermedius strain CUVET17-450]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=869012 RAM45_RS04120 WP_037542586.1 930605..931321(-) (agrA) [Staphylococcus pseudintermedius strain CUVET17-450]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836