Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP52_RS04980 Genome accession   NZ_CP148252
Coordinates   943412..943795 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1323CCJ0007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938412..948795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP52_RS04960 (WHP52_04960) - 938491..940425 (-) 1935 WP_002876691.1 ribonuclease R family protein -
  WHP52_RS04965 (WHP52_04965) ilvC 940544..941566 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  WHP52_RS04970 (WHP52_04970) - 941570..942652 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  WHP52_RS04975 (WHP52_04975) dprA 942642..943415 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  WHP52_RS04980 (WHP52_04980) dprB 943412..943795 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHP52_RS04985 (WHP52_04985) - 943824..944663 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP52_RS04990 (WHP52_04990) msrA 944839..945336 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP52_RS04995 (WHP52_04995) ppa 945377..945895 (-) 519 WP_002855031.1 inorganic diphosphatase -
  WHP52_RS05000 (WHP52_05000) adk 945905..946483 (-) 579 WP_002855137.1 adenylate kinase -
  WHP52_RS05005 (WHP52_05005) aspS 946480..948231 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=868997 WHP52_RS04980 WP_002852281.1 943412..943795(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0007]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=868997 WHP52_RS04980 WP_002852281.1 943412..943795(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0007]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449