Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RAM07_RS07755 Genome accession   NZ_CP132379
Coordinates   1625713..1627518 (+) Length   601 a.a.
NCBI ID   WP_306268567.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain K-FP18     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620713..1632518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM07_RS07730 (RAM07_07735) - 1621071..1621547 (-) 477 WP_046327608.1 threonine/serine exporter family protein -
  RAM07_RS07735 (RAM07_07740) - 1621550..1622329 (-) 780 WP_046327609.1 threonine/serine exporter family protein -
  RAM07_RS07740 (RAM07_07745) - 1622339..1623886 (-) 1548 WP_306268561.1 ABC-F family ATP-binding cassette domain-containing protein -
  RAM07_RS07745 (RAM07_07750) - 1623993..1624352 (-) 360 WP_306268563.1 hypothetical protein -
  RAM07_RS07750 (RAM07_07755) - 1624382..1625563 (-) 1182 WP_109918778.1 LCP family protein -
  RAM07_RS07755 (RAM07_07760) pepF 1625713..1627518 (+) 1806 WP_306268567.1 oligoendopeptidase F Regulator
  RAM07_RS07760 (RAM07_07765) - 1627627..1628769 (-) 1143 WP_306268569.1 ArgE/DapE family deacylase -
  RAM07_RS07765 (RAM07_07770) - 1628783..1629532 (-) 750 WP_306268571.1 amino acid ABC transporter ATP-binding protein -
  RAM07_RS07770 (RAM07_07775) - 1629525..1631015 (-) 1491 WP_306268573.1 ABC transporter substrate-binding protein/permease -
  RAM07_RS07775 (RAM07_07780) - 1631177..1632406 (-) 1230 WP_306268575.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68470.81 Da        Isoelectric Point: 5.0105

>NTDB_id=868857 RAM07_RS07755 WP_306268567.1 1625713..1627518(+) (pepF) [Lactobacillus helsingborgensis strain K-FP18]
MTIPKRKDVPENLKWDLTRIFKSDKDWEDEYTRVKKEIPALSTIKDNFTTSGTSLYDGITQILAVTRHLEKVYTYASLSS
DVDTKDAHYLGLVSQVQGLGNQFDAVTAFMAPAILSLSPEKLTAFKREEPRLADYNHLLDQITRMRPYTLSAQEEKLVAD
AGDAMSASENTYNVLTNSDMEFGYTENDDGEMVQLSEGLYSLLIQSQNRTIRKEAFDAMYATYGQYQNSLAATLSGVVKK
HNYYARVHHYKSARDCAINENNVPAAVYDTLITEVNKHINLLHEYVALRKQILGLKDLQMWDIYVPLTGKPSLSYTFDAA
KAEAQKALQPLGADYLKQVDYIFNNRVIDVVESKNKVTGAYSGGCYDTDAYELLNWEDNIDSLYTLVHETGHSVHSMYTR
QNQPYVYGNYPIFVAEIASTTNENILTEYFLAHVKDPKTRAFVLNYYLDSFKGTLFRQAQFAEFEQKIHEMDAQGEPLTA
DRLNKCYGELNQRYYGDCVEPGGEIAKEWTRIPHFYYNFYVYQYATGFAAATALANNVVHGTEEQTKAYINFLKSGSSDY
PVEIMKKAGVDMTQPEYLEEAFATFAKRLAEFKEIVQNNFS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=868857 RAM07_RS07755 WP_306268567.1 1625713..1627518(+) (pepF) [Lactobacillus helsingborgensis strain K-FP18]
ATGACAATTCCTAAAAGAAAAGACGTCCCTGAGAATCTTAAATGGGACTTAACCAGAATATTCAAATCTGATAAAGACTG
GGAAGATGAATATACACGTGTTAAAAAAGAAATACCAGCTTTAAGCACTATCAAAGATAATTTTACTACTTCGGGAACCT
CTTTATATGATGGGATTACGCAAATACTTGCAGTTACTCGCCACTTGGAAAAAGTTTATACTTATGCCAGTTTGTCCAGT
GATGTCGATACCAAAGATGCCCACTATTTGGGTTTAGTTTCTCAAGTACAAGGACTAGGTAATCAATTTGATGCCGTCAC
CGCTTTTATGGCTCCTGCAATTTTAAGTCTTTCTCCTGAAAAATTAACCGCCTTTAAACGCGAAGAACCAAGACTAGCTG
ATTACAATCATTTATTGGATCAGATTACCAGAATGCGGCCATATACTTTGTCTGCTCAAGAAGAAAAATTAGTTGCCGAT
GCTGGAGATGCAATGTCTGCTTCTGAAAATACCTATAATGTGCTGACTAATTCGGACATGGAATTTGGTTATACGGAAAA
TGATGACGGCGAAATGGTGCAATTATCGGAAGGATTATATTCCCTACTAATCCAATCGCAAAACAGAACTATCCGCAAGG
AAGCTTTTGACGCCATGTATGCCACATACGGTCAATACCAAAACTCATTGGCGGCCACTCTTTCTGGAGTAGTCAAAAAG
CATAACTATTATGCGCGCGTTCATCATTATAAGTCAGCCCGGGATTGCGCGATCAATGAAAATAATGTACCGGCTGCCGT
TTACGATACCTTAATTACAGAGGTAAACAAGCATATAAACTTACTACACGAATATGTGGCTCTGCGTAAACAAATTTTAG
GTTTAAAAGACCTGCAAATGTGGGACATCTATGTGCCCCTGACAGGCAAACCATCTTTAAGCTATACATTTGACGCAGCC
AAAGCGGAAGCGCAAAAAGCGTTGCAACCACTTGGAGCAGATTATTTAAAACAGGTAGACTATATTTTCAATAATCGGGT
AATTGATGTGGTTGAATCAAAAAATAAAGTTACAGGGGCTTATTCTGGTGGCTGCTATGATACAGACGCTTACGAACTCC
TTAACTGGGAGGATAATATTGATTCTCTTTATACTTTAGTACACGAAACGGGGCATTCAGTTCACAGTATGTATACAAGG
CAAAATCAGCCTTACGTTTATGGTAATTATCCTATATTTGTTGCCGAAATTGCCTCAACTACTAACGAAAACATCCTGAC
CGAATACTTTTTAGCCCATGTAAAAGATCCTAAAACACGTGCATTTGTTCTTAATTACTACTTAGATTCATTTAAAGGGA
CTTTATTCAGACAAGCTCAATTCGCAGAATTTGAACAAAAAATTCACGAAATGGATGCTCAGGGTGAACCTTTAACTGCT
GACCGGCTAAATAAATGCTATGGTGAACTTAACCAGCGCTACTATGGCGATTGCGTTGAACCGGGCGGAGAAATTGCCAA
AGAGTGGACCAGAATCCCGCACTTTTACTACAATTTCTATGTCTATCAGTACGCTACAGGTTTTGCTGCAGCTACAGCTC
TGGCTAATAACGTTGTTCATGGCACCGAAGAACAAACAAAAGCTTACATTAACTTTTTAAAATCTGGTTCAAGTGACTAT
CCGGTTGAAATCATGAAAAAAGCAGGCGTTGACATGACTCAACCTGAATATTTGGAAGAAGCATTTGCCACTTTTGCTAA
ACGCTTAGCTGAATTTAAGGAAATTGTTCAAAATAATTTCAGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.155

98.502

0.484