Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RAM13_RS06590 Genome accession   NZ_CP132378
Coordinates   1354369..1356174 (+) Length   601 a.a.
NCBI ID   WP_306265790.1    Uniprot ID   -
Organism   Lactobacillus apis strain K-MP7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349369..1361174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM13_RS06565 (RAM13_06565) - 1349380..1349856 (-) 477 WP_306265782.1 threonine/serine exporter family protein -
  RAM13_RS06570 (RAM13_06570) - 1349859..1350635 (-) 777 WP_306265784.1 threonine/serine exporter family protein -
  RAM13_RS06575 (RAM13_06575) - 1350645..1352189 (-) 1545 WP_306265786.1 ABC-F family ATP-binding cassette domain-containing protein -
  RAM13_RS06580 (RAM13_06580) - 1352611..1352970 (-) 360 WP_046307795.1 hypothetical protein -
  RAM13_RS06585 (RAM13_06585) - 1353016..1354224 (-) 1209 WP_306265788.1 LCP family protein -
  RAM13_RS06590 (RAM13_06590) pepF 1354369..1356174 (+) 1806 WP_306265790.1 oligoendopeptidase F Regulator
  RAM13_RS06595 (RAM13_06595) - 1356216..1357358 (-) 1143 WP_306265792.1 ArgE/DapE family deacylase -
  RAM13_RS06600 (RAM13_06600) - 1357373..1358122 (-) 750 WP_306265794.1 amino acid ABC transporter ATP-binding protein -
  RAM13_RS06605 (RAM13_06605) - 1358115..1359611 (-) 1497 WP_306265796.1 ABC transporter substrate-binding protein/permease -
  RAM13_RS06610 (RAM13_06610) - 1359890..1360687 (-) 798 WP_074425878.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68759.60 Da        Isoelectric Point: 4.4384

>NTDB_id=868841 RAM13_RS06590 WP_306265790.1 1354369..1356174(+) (pepF) [Lactobacillus apis strain K-MP7]
MAIPKRTEVPEELKWDLTRVFSSDNDWEQEYTLIKKEVQDLSKLKKDFTKDGHYLYDGLTKILEVGRRLEKVYVYATMSS
DVDSSDSHYLGYVAQAQTLASQFEAATSFMNPSILELSQAELKQFMENEPKLNNYAHMLEQIMQQKPHTLSAQEEKIIAD
AGDALGTSENTFNVLTNSDMAYGYVETDDGEMVQLSDGLYSNLIQSQNREVRKNAFDVMYATYGQFENSLASTLSGVVKQ
HNYLARVHNYDSARSSALAENHVPTVVYDTLISEVDSHLDLLHDYVALRKQILGLDDLQMWDLYVPLTGTPSLSYTFEQA
KAEAKKALVPLGEDYLKQVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDAYELLNWENNIDSLYTLVHETGHSVHSMYTR
QTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFVLNYYLDSFKGTLFRQTQFAEFEQYIHDLDAKGEPLTA
DMLDDFYGDLNQRYYGDAVEPGSEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTPEQREAYINFLKSGSSDY
PVEIMKKAGVDMTKPDYLEEAFETFKKRLAEFKDIIKNDFK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=868841 RAM13_RS06590 WP_306265790.1 1354369..1356174(+) (pepF) [Lactobacillus apis strain K-MP7]
ATGGCTATACCTAAAAGAACAGAAGTCCCAGAAGAACTTAAATGGGACTTAACAAGAGTATTTAGTTCAGATAATGACTG
GGAACAAGAATATACTCTTATCAAAAAAGAAGTGCAAGACTTAAGCAAACTTAAGAAAGATTTTACTAAGGACGGTCATT
ATCTGTACGATGGCTTAACTAAGATTTTGGAAGTTGGTCGCCGTTTAGAAAAAGTCTATGTTTATGCAACAATGTCCAGC
GACGTTGACTCAAGCGACTCACACTATCTTGGCTATGTAGCTCAGGCTCAAACCTTAGCAAGCCAATTTGAAGCAGCCAC
TTCCTTTATGAATCCTTCAATTTTAGAGCTCTCTCAAGCCGAGTTAAAACAGTTTATGGAAAATGAGCCCAAGCTAAACA
ATTACGCTCATATGCTTGAACAAATTATGCAGCAAAAGCCGCATACTCTTTCGGCACAGGAAGAAAAAATAATTGCTGAT
GCTGGGGATGCTCTTGGTACTTCAGAAAACACCTTCAACGTTTTAACAAATTCAGATATGGCGTATGGCTACGTTGAAAC
TGATGATGGCGAAATGGTTCAGCTGTCAGACGGACTTTATTCCAACCTCATTCAATCGCAAAACCGTGAAGTGCGTAAAA
ATGCCTTTGATGTAATGTATGCTACCTATGGTCAATTTGAAAATTCACTTGCTTCAACTCTTTCAGGAGTTGTTAAACAG
CATAATTACTTGGCTCGAGTTCATAATTATGACTCTGCACGCAGCTCAGCTTTAGCAGAGAATCACGTGCCTACTGTTGT
CTACGATACCTTGATTAGTGAGGTTGATAGTCACCTTGATTTACTTCATGACTACGTTGCTTTACGCAAACAAATTCTCG
GACTTGATGATCTGCAAATGTGGGACCTGTATGTTCCACTAACTGGAACGCCATCATTGTCATACACTTTTGAGCAAGCC
AAAGCAGAGGCTAAAAAAGCCCTAGTTCCATTAGGAGAAGACTACTTAAAGCAAGTTGATTATATTTTTAATAACCGTGT
AATCGACGTCGTTGAATCGCAAAATAAGGTTACTGGTGCTTATTCCGGTGGTTCTTATGATACAGATGCTTATGAGCTTT
TGAACTGGGAAAATAATATCGATTCACTTTACACTCTTGTTCATGAAACTGGCCACTCCGTCCACAGTATGTACACACGG
CAAACTCAACCTTATGTTTATGGCGATTATCCTATTTTTGTAGCTGAAATTGCATCAACCACCAACGAGAACATTTTAAC
CGAGTACTTTTTAGATCATATCACTGATCCAAAAACACGTGCTTTCGTGCTTAACTACTATCTTGATTCGTTTAAGGGAA
CATTATTCAGACAAACTCAATTTGCTGAATTTGAGCAGTATATTCATGACTTAGACGCTAAAGGTGAGCCATTAACTGCA
GACATGCTTGACGACTTCTACGGTGACTTAAACCAGCGTTACTATGGCGATGCGGTTGAACCAGGAAGTGAAATTGCTAA
AGAGTGGGCAAGAATTCCACACTTCTATTACAATTTCTACGTTTACCAATATGCAACTGGCTTTGCAGCAGCAACTGCAC
TAGCCAATAATGTTGTGCACGGTACACCAGAACAAAGAGAAGCTTATATTAACTTCTTAAAATCAGGTTCAAGTGATTAT
CCAGTCGAAATCATGAAAAAAGCCGGAGTTGATATGACTAAACCAGATTATCTGGAAGAAGCCTTTGAAACCTTTAAAAA
GCGCCTAGCCGAATTCAAAGACATCATCAAAAACGATTTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.003

99.501

0.507