Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AABJ73_RS20385 Genome accession   NZ_AP027520
Coordinates   4164131..4165321 (+) Length   396 a.a.
NCBI ID   WP_072721750.1    Uniprot ID   -
Organism   Escherichia coli strain LR-31     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4159131..4170321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ73_RS20370 (VEE27_39230) - 4159646..4161322 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  AABJ73_RS20375 (VEE27_39240) kdsB 4161332..4162072 (+) 741 WP_000030759.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABJ73_RS20380 (VEE27_39250) - 4162069..4164096 (+) 2028 WP_063085021.1 capsular polysaccharide biosynthesis protein -
  AABJ73_RS20385 (VEE27_39260) kpsS 4164131..4165321 (+) 1191 WP_072721750.1 capsular biosynthesis protein Regulator
  AABJ73_RS20390 - 4166064..4166757 (+) 694 Protein_3987 IS1 family transposase -
  AABJ73_RS20395 (VEE27_39290) - 4167022..4168059 (-) 1038 WP_033870964.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 47305.62 Da        Isoelectric Point: 10.0561

>NTDB_id=86884 AABJ73_RS20385 WP_072721750.1 4164131..4165321(+) (kpsS) [Escherichia coli strain LR-31]
MQGDALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENFKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNATYYGIFSLRV

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=86884 AABJ73_RS20385 WP_072721750.1 4164131..4165321(+) (kpsS) [Escherichia coli strain LR-31]
ATGCAAGGTGATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTTAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGTTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCAACTTATTATGGAATTTTCTCACTCAGAGTATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.848

99.495

0.396

Multiple sequence alignment