Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RAM00_RS08660 Genome accession   NZ_CP132376
Coordinates   2000837..2001298 (-) Length   153 a.a.
NCBI ID   WP_198189931.1    Uniprot ID   -
Organism   Snodgrassella alvi strain K-FP26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995837..2006298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM00_RS08650 (RAM00_08645) waaA 1997849..1999138 (+) 1290 WP_306175912.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  RAM00_RS08655 (RAM00_08650) - 1999324..2000313 (-) 990 WP_198189932.1 sulfatase-like hydrolase/transferase -
  RAM00_RS08660 (RAM00_08655) pilA 2000837..2001298 (-) 462 WP_198189931.1 pilin Machinery gene
  RAM00_RS08665 (RAM00_08660) - 2001447..2001911 (-) 465 WP_306175913.1 pilin -
  RAM00_RS08670 (RAM00_08665) - 2002067..2002516 (-) 450 WP_084547937.1 pilin -
  RAM00_RS08675 (RAM00_08670) - 2002794..2003555 (-) 762 WP_198189928.1 hypothetical protein -
  RAM00_RS08680 (RAM00_08675) - 2003970..2006198 (+) 2229 WP_306175914.1 FepA family TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16009.43 Da        Isoelectric Point: 9.3699

>NTDB_id=868799 RAM00_RS08660 WP_198189931.1 2000837..2001298(-) (pilA) [Snodgrassella alvi strain K-FP26]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNNNCMSGDNNSLDTTIDEQTG
KYGVAKIGGTAKTGSISANAPTGCTITYTVNPNKVSASIATKTLVLDVLKNGSLKKNTSSTMPDKYIPKAFTI

Nucleotide


Download         Length: 462 bp        

>NTDB_id=868799 RAM00_RS08660 WP_198189931.1 2000837..2001298(-) (pilA) [Snodgrassella alvi strain K-FP26]
ATGAAAGCTTTTCAAAAAGGTTTTACTTTAATTGAATTGATGATCGTTATCGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAGGCTTCCAGTCTGGCTGCTGGTCTGAAAACTCAGA
TTATCGATAATTTGCAGAATAATAATTGTATGTCAGGTGACAATAATTCACTTGATACCACCATTGATGAGCAGACTGGT
AAATACGGTGTAGCAAAAATCGGTGGTACTGCTAAAACCGGCAGTATTTCTGCTAACGCTCCAACAGGCTGTACAATTAC
ATATACAGTAAACCCAAACAAAGTATCTGCTTCTATTGCTACTAAGACCTTAGTATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATACTTCTTCAACTATGCCTGATAAATATATACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-150)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

50.34

96.078

0.484