Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RAM00_RS04985 Genome accession   NZ_CP132376
Coordinates   1148491..1148961 (-) Length   156 a.a.
NCBI ID   WP_037391581.1    Uniprot ID   -
Organism   Snodgrassella alvi strain K-FP26     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143491..1153961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM00_RS04965 (RAM00_04960) lpdA 1143810..1145561 (+) 1752 WP_306176431.1 dihydrolipoyl dehydrogenase -
  RAM00_RS04970 (RAM00_04965) - 1145838..1146965 (+) 1128 WP_306176432.1 AI-2E family transporter -
  RAM00_RS04975 (RAM00_04970) rpsT 1147087..1147353 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  RAM00_RS04980 (RAM00_04975) - 1147386..1148339 (+) 954 WP_084547442.1 bile acid:sodium symporter family protein -
  RAM00_RS04985 (RAM00_04980) recX 1148491..1148961 (-) 471 WP_037391581.1 recombination regulator RecX Regulator
  RAM00_RS04990 (RAM00_04985) - 1148958..1149665 (-) 708 WP_306176433.1 phosphoglycolate phosphatase -
  RAM00_RS04995 (RAM00_04990) - 1149823..1150893 (-) 1071 WP_279035153.1 aldose epimerase family protein -
  RAM00_RS05000 (RAM00_04995) - 1150880..1152193 (-) 1314 WP_306176434.1 replication-associated recombination protein A -
  RAM00_RS05005 (RAM00_05000) - 1152362..1152709 (+) 348 WP_306176435.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18173.58 Da        Isoelectric Point: 8.0793

>NTDB_id=868791 RAM00_RS04985 WP_037391581.1 1148491..1148961(-) (recX) [Snodgrassella alvi strain K-FP26]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=868791 RAM00_RS04985 WP_037391581.1 1148491..1148961(-) (recX) [Snodgrassella alvi strain K-FP26]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGCAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTTGATGCAGCTCTGATTGCAGATTATTTACCAGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGTCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCTTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487