Detailed information NTG0868780

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAM00_RS01275
• Genome accession: NZ_CP132376
• Coordinates: 291707..293002 (-)
• Length: 431 a.a.
• NCBI ID: WP_198210054.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain K-FP26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 286707..298002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM00_RS01260 (RAM00_01260)	-	288346..289767 (+)	1422	WP_306176157.1	McrB family protein	-
RAM00_RS01265 (RAM00_01265)	-	289799..290917 (+)	1119	WP_306176158.1	hypothetical protein	-
RAM00_RS01270 (RAM00_01270)	-	290953..291486 (-)	534	WP_306176159.1	hypothetical protein	-
RAM00_RS01275 (RAM00_01275)	pilA	291707..293002 (-)	1296	WP_198210054.1	signal recognition particle-docking protein FtsY	Machinery gene
RAM00_RS01280 (RAM00_01280)	-	293218..293832 (-)	615	WP_078475236.1	Type 1 glutamine amidotransferase-like domain-containing protein	-
RAM00_RS01285 (RAM00_01285)	-	293877..294428 (-)	552	WP_037392063.1	5'-3'-deoxyribonucleotidase	-
RAM00_RS01290 (RAM00_01290)	ruvA	294472..295053 (-)	582	WP_025331789.1	Holliday junction branch migration protein RuvA	-
RAM00_RS01295 (RAM00_01295)	-	295131..295880 (-)	750	WP_280522168.1	septal ring lytic transglycosylase RlpA family protein	-
RAM00_RS01300 (RAM00_01300)	-	296207..296917 (-)	711	WP_232335960.1	ComF family protein	-
RAM00_RS01305 (RAM00_01305)	bioH	296916..297668 (+)	753	WP_078475237.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 431 a.a.
• Molecular weight: 46177.48 Da
• Isoelectric Point: 4.4535

>NTDB_id=868780 RAM00_RS01275 WP_198210054.1 291707..293002(-) (pilA) [Snodgrassella alvi strain K-FP26]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSVQTEVIPQPEPAISDPVAEKPEQADTASVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASPVQTPVASENTVVIAAEPDTVSEQTEKPAKLSWAARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE

Nucleotide

• Length: 1296 bp

>NTDB_id=868780 RAM00_RS01275 WP_198210054.1 291707..293002(-) (pilA) [Snodgrassella alvi strain K-FP26]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAGCAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGTTCAGACTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAACCTGAGCAGGCAGACACCGCTTCTGTTCAACCACAGGCCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCACCCGTTCAGACACCTGTTGCTAGTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGGCTGCACGAC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCTGTATTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTGACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCTCGCGAACAATTGCAGCAATGGGGTGAACGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ACTCAGCAGCAGTCTGCTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATTTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTCGTAGCCTTTGATGATGCGCTCG
GATTAACCGGTCTGATAGTTTCCAAACTGGATGGTACAGCCAAAGGCGGTATTCTCGCGGCACTGGCTGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGAGCATTTGTAGATGCATT
AATTGAGGATGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (145-210)

• SRP54-type protein, GTPase domain (SRP54) (229-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	63.901	100	0.661