Detailed information NTG0868776

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RAM05_RS09855
• Genome accession: NZ_CP132375
• Coordinates: 2192262..2193746 (-)
• Length: 494 a.a.
• NCBI ID: WP_080690460.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain wkB9
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2187262..2198746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM05_RS09840 (RAM05_09840)	amgK	2189378..2190382 (+)	1005	WP_025331226.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
RAM05_RS09845 (RAM05_09845)	-	2190453..2191430 (-)	978	WP_025331227.1	hypothetical protein	-
RAM05_RS09850 (RAM05_09850)	-	2191501..2192262 (-)	762	WP_025331228.1	class I SAM-dependent methyltransferase	-
RAM05_RS09855 (RAM05_09855)	pilR	2192262..2193746 (-)	1485	WP_080690460.1	sigma-54 dependent transcriptional regulator	Regulator
RAM05_RS09860 (RAM05_09860)	-	2193739..2195313 (-)	1575	WP_025331230.1	nitrogen regulation protein NR(II)	-
RAM05_RS09865 (RAM05_09865)	parC	2195320..2197638 (-)	2319	WP_025331231.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55559.33 Da
• Isoelectric Point: 5.1258

>NTDB_id=868776 RAM05_RS09855 WP_080690460.1 2192262..2193746(-) (pilR) [Snodgrassella alvi strain wkB9]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=868776 RAM05_RS09855 WP_080690460.1 2192262..2193746(-) (pilR) [Snodgrassella alvi strain wkB9]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAACAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATTTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	41.889	98.583	0.413