Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RAM05_RS05465 Genome accession   NZ_CP132375
Coordinates   1205430..1205900 (-) Length   156 a.a.
NCBI ID   WP_025330394.1    Uniprot ID   -
Organism   Snodgrassella alvi strain wkB9     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200430..1210900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM05_RS05445 (RAM05_05445) lpdA 1200751..1202502 (+) 1752 WP_025330390.1 dihydrolipoyl dehydrogenase -
  RAM05_RS05450 (RAM05_05450) - 1202779..1203906 (+) 1128 WP_025330391.1 AI-2E family transporter -
  RAM05_RS05455 (RAM05_05455) rpsT 1204028..1204294 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  RAM05_RS05460 (RAM05_05460) - 1204327..1205280 (+) 954 WP_025330393.1 bile acid:sodium symporter family protein -
  RAM05_RS05465 (RAM05_05465) recX 1205430..1205900 (-) 471 WP_025330394.1 recombination regulator RecX Regulator
  RAM05_RS05470 (RAM05_05470) - 1205897..1206604 (-) 708 WP_038648761.1 phosphoglycolate phosphatase -
  RAM05_RS05475 (RAM05_05475) - 1206762..1207832 (-) 1071 WP_025330396.1 aldose epimerase family protein -
  RAM05_RS05480 (RAM05_05480) - 1207819..1209132 (-) 1314 WP_025330397.1 replication-associated recombination protein A -
  RAM05_RS05485 (RAM05_05485) - 1209301..1209648 (+) 348 WP_025330398.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18172.64 Da        Isoelectric Point: 8.0793

>NTDB_id=868767 RAM05_RS05465 WP_025330394.1 1205430..1205900(-) (recX) [Snodgrassella alvi strain wkB9]
MKQKISLRARAIALLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTINAIAVLQKKYRQPPADLKEKHKCMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=868767 RAM05_RS05465 WP_025330394.1 1205430..1205900(-) (recX) [Snodgrassella alvi strain wkB9]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTGCCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAACTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAATCAG
ATGAACGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTTGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAATTAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAATGTATGCATTTTCTTGCTTACCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGTCAGGCGTGGGCTGATACTTCGCTGCCTGACGAAGATGAATACTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487