Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ73_RS18435 Genome accession   NZ_AP027520
Coordinates   3758593..3759108 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753593..3764108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ73_RS18410 (VEE27_35510) ygaZ 3753992..3754729 (+) 738 WP_058905347.1 L-valine exporter subunit YgaZ -
  AABJ73_RS18415 (VEE27_35520) ygaH 3754719..3755054 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABJ73_RS18420 (VEE27_35530) emrR 3755145..3755675 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ73_RS18425 (VEE27_35540) emrA 3755802..3756974 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ73_RS18430 (VEE27_35550) emrB 3756991..3758529 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ73_RS18435 (VEE27_35560) luxS 3758593..3759108 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ73_RS18440 (VEE27_35570) gshA 3759258..3760814 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABJ73_RS18445 (VEE27_35580) yqaA 3760887..3761315 (-) 429 WP_001287454.1 YqaA family protein -
  AABJ73_RS18450 (VEE27_35590) yqaB 3761312..3761878 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ73_RS18475 (VEE27_35600) csrA 3763197..3763382 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86875 AABJ73_RS18435 WP_001130211.1 3758593..3759108(-) (luxS) [Escherichia coli strain LR-31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86875 AABJ73_RS18435 WP_001130211.1 3758593..3759108(-) (luxS) [Escherichia coli strain LR-31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment