Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RAM23_RS05250 Genome accession   NZ_CP132374
Coordinates   1181093..1181563 (-) Length   156 a.a.
NCBI ID   WP_041880343.1    Uniprot ID   -
Organism   Snodgrassella alvi strain wkB339     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176093..1186563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM23_RS05230 (RAM23_05225) lpdA 1176415..1178166 (+) 1752 WP_078475321.1 dihydrolipoyl dehydrogenase -
  RAM23_RS05235 (RAM23_05230) - 1178442..1179569 (+) 1128 WP_078475343.1 AI-2E family transporter -
  RAM23_RS05240 (RAM23_05235) rpsT 1179691..1179957 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  RAM23_RS05245 (RAM23_05240) - 1179990..1180943 (+) 954 WP_100125301.1 bile acid:sodium symporter family protein -
  RAM23_RS05250 (RAM23_05245) recX 1181093..1181563 (-) 471 WP_041880343.1 recombination regulator RecX Regulator
  RAM23_RS05255 (RAM23_05250) - 1181560..1182267 (-) 708 WP_100125302.1 phosphoglycolate phosphatase -
  RAM23_RS05260 (RAM23_05255) - 1182426..1183496 (-) 1071 WP_172397380.1 aldose epimerase family protein -
  RAM23_RS05265 (RAM23_05260) - 1183483..1184796 (-) 1314 WP_100125303.1 replication-associated recombination protein A -
  RAM23_RS05270 (RAM23_05265) - 1184965..1185312 (+) 348 WP_100125304.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18256.66 Da        Isoelectric Point: 9.1774

>NTDB_id=868742 RAM23_RS05250 WP_041880343.1 1181093..1181563(-) (recX) [Snodgrassella alvi strain wkB339]
MKQKISLRARAITLLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKRMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=868742 RAM23_RS05250 WP_041880343.1 1181093..1181563(-) (recX) [Snodgrassella alvi strain wkB339]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTACCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAGCTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAGTCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTACA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAACGTATGCATTTTCTTGCTTATCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCAGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487