Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP34_RS03130 Genome accession   NZ_CP148234
Coordinates   605236..605619 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 600236..610619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP34_RS03110 (WHP34_03110) - 600315..602249 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  WHP34_RS03115 (WHP34_03115) ilvC 602368..603390 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP34_RS03120 (WHP34_03120) - 603394..604476 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  WHP34_RS03125 (WHP34_03125) dprA 604466..605239 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  WHP34_RS03130 (WHP34_03130) dprB 605236..605619 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHP34_RS03135 (WHP34_03135) - 605648..606487 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP34_RS03140 (WHP34_03140) msrA 606663..607160 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP34_RS03145 (WHP34_03145) ppa 607201..607719 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHP34_RS03150 (WHP34_03150) adk 607729..608307 (-) 579 WP_002859580.1 adenylate kinase -
  WHP34_RS03155 (WHP34_03155) aspS 608304..610055 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=868656 WHP34_RS03130 WP_002858579.1 605236..605619(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0020]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=868656 WHP34_RS03130 WP_002858579.1 605236..605619(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0020]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449