Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   K6K01_RS12980 Genome accession   NZ_AP024622
Coordinates   2497189..2497992 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3096     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2492189..2502992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K01_RS12955 (BsBEST3096_24770) glpQB 2493335..2494066 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  K6K01_RS12960 (BsBEST3096_24780) yqiI 2494145..2494765 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  K6K01_RS12965 (BsBEST3096_24790) yqiH 2494780..2495073 (-) 294 WP_003230284.1 lipoprotein -
  K6K01_RS12970 - 2495381..2495533 (+) 153 WP_003230276.1 hypothetical protein -
  K6K01_RS12975 (BsBEST3096_24800) yqiG 2495606..2496724 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  K6K01_RS12980 (BsBEST3096_24810) spo0A 2497189..2497992 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  K6K01_RS12985 (BsBEST3096_24820) spoIVB 2498268..2499548 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  K6K01_RS12990 (BsBEST3096_24830) recN 2499723..2501453 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  K6K01_RS12995 (BsBEST3096_24840) argR 2501490..2501939 (-) 450 WP_003230265.1 arginine repressor ArgR -
  K6K01_RS13000 (BsBEST3096_24850) yqxC 2502037..2502882 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=86860 K6K01_RS12980 WP_003226427.1 2497189..2497992(-) (spo0A) [Bacillus subtilis strain BEST3096]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=86860 K6K01_RS12980 WP_003226427.1 2497189..2497992(-) (spo0A) [Bacillus subtilis strain BEST3096]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment