Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RAM29_RS12630 Genome accession   NZ_CP132367
Coordinates   2577922..2578638 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain UNC_SA48     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2572922..2583638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM29_RS12610 (RAM29_12605) - 2574014..2574964 (+) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -
  RAM29_RS12615 (RAM29_12610) - 2575113..2576597 (+) 1485 WP_000141432.1 sucrose-6-phosphate hydrolase -
  RAM29_RS12620 (RAM29_12615) - 2576594..2577553 (+) 960 WP_001253312.1 carbohydrate kinase -
  RAM29_RS12625 (RAM29_12620) - 2577741..2577850 (-) 110 Protein_2434 hypothetical protein -
  RAM29_RS12630 (RAM29_12625) agrA 2577922..2578638 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  RAM29_RS12635 (RAM29_12630) agrC 2578657..2579940 (-) 1284 WP_000447888.1 quorum-sensing sensor histidine kinase AgrC -
  RAM29_RS12640 (RAM29_12635) agrD 2579970..2580113 (-) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  RAM29_RS12645 (RAM29_12640) - 2580116..2580679 (-) 564 WP_001105696.1 accessory gene regulator AgrB -
  RAM29_RS13505 hld 2580969..2581049 (+) 81 WP_000046022.1 delta-hemolysin -
  RAM29_RS12655 (RAM29_12650) - 2581649..2582434 (-) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  RAM29_RS12660 (RAM29_12655) - 2582795..2583421 (-) 627 WP_000522381.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=868598 RAM29_RS12630 WP_000688492.1 2577922..2578638(-) (agrA) [Staphylococcus aureus strain UNC_SA48]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=868598 RAM29_RS12630 WP_000688492.1 2577922..2578638(-) (agrA) [Staphylococcus aureus strain UNC_SA48]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1