Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RAM32_RS14255 Genome accession   NZ_CP132361
Coordinates   2836607..2837323 (+) Length   238 a.a.
NCBI ID   WP_064127170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UNC_SA56     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2831607..2842323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM32_RS14225 (RAM32_14215) - 2831822..2832448 (+) 627 WP_000522384.1 nitroreductase family protein -
  RAM32_RS14230 (RAM32_14220) - 2832809..2833594 (+) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  RAM32_RS14405 hld 2834194..2834274 (-) 81 WP_000046022.1 delta-hemolysin -
  RAM32_RS14240 (RAM32_14230) - 2834564..2835127 (+) 564 WP_001105704.1 accessory gene regulator AgrB -
  RAM32_RS14245 (RAM32_14235) agrD 2835131..2835271 (+) 141 WP_000735197.1 cyclic lactone autoinducer peptide AgrD -
  RAM32_RS14250 (RAM32_14240) agrC 2835296..2836588 (+) 1293 WP_000387809.1 quorum-sensing sensor histidine kinase AgrC -
  RAM32_RS14255 (RAM32_14245) agrA 2836607..2837323 (+) 717 WP_064127170.1 quorum-sensing response regulator AgrA Regulator
  RAM32_RS14260 (RAM32_14250) - 2837395..2837504 (+) 110 Protein_2770 hypothetical protein -
  RAM32_RS14265 (RAM32_14255) - 2837692..2838651 (-) 960 WP_001253293.1 carbohydrate kinase -
  RAM32_RS14270 (RAM32_14260) - 2838648..2840132 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  RAM32_RS14275 (RAM32_14265) - 2840281..2841231 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27961.97 Da        Isoelectric Point: 6.0927

>NTDB_id=868472 RAM32_RS14255 WP_064127170.1 2836607..2837323(+) (agrA) [Staphylococcus aureus strain UNC_SA56]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPVELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=868472 RAM32_RS14255 WP_064127170.1 2836607..2837323(+) (agrA) [Staphylococcus aureus strain UNC_SA56]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGTAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGTTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992