Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP32_RS03125 Genome accession   NZ_CP148227
Coordinates   599348..599731 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594348..604731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS03105 (WHP32_03105) - 594427..596361 (-) 1935 WP_338878262.1 ribonuclease R family protein -
  WHP32_RS03110 (WHP32_03110) ilvC 596480..597502 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHP32_RS03115 (WHP32_03115) - 597506..598588 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  WHP32_RS03120 (WHP32_03120) dprA 598578..599351 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  WHP32_RS03125 (WHP32_03125) dprB 599348..599731 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHP32_RS03130 (WHP32_03130) - 599760..600599 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP32_RS03135 (WHP32_03135) msrA 600775..601272 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP32_RS03140 (WHP32_03140) ppa 601313..601831 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHP32_RS03145 (WHP32_03145) adk 601841..602419 (-) 579 WP_002859580.1 adenylate kinase -
  WHP32_RS03150 (WHP32_03150) aspS 602416..604167 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=868422 WHP32_RS03125 WP_002858579.1 599348..599731(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0040]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=868422 WHP32_RS03125 WP_002858579.1 599348..599731(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0040]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449