Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q9451_RS06535 Genome accession   NZ_CP132350
Coordinates   1478337..1479707 (+) Length   456 a.a.
NCBI ID   WP_012274175.1    Uniprot ID   A0A1W2CNH3
Organism   Pseudomonas sp. NY8896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473337..1484707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9451_RS06505 (Q9451_06505) cydB 1473502..1474509 (+) 1008 WP_012274181.1 cytochrome d ubiquinol oxidase subunit II -
  Q9451_RS06510 (Q9451_06510) - 1474519..1474674 (+) 156 WP_012274180.1 DUF2474 domain-containing protein -
  Q9451_RS06515 (Q9451_06515) - 1474792..1475916 (-) 1125 WP_012274179.1 methyltransferase -
  Q9451_RS06520 (Q9451_06520) - 1476013..1476720 (-) 708 WP_012274178.1 autoinducer binding domain-containing protein -
  Q9451_RS06525 (Q9451_06525) - 1476931..1477707 (+) 777 WP_041166589.1 ferredoxin--NADP reductase -
  Q9451_RS06530 (Q9451_06530) mscL 1477741..1478160 (-) 420 WP_012274176.1 large-conductance mechanosensitive channel protein MscL -
  Q9451_RS06535 (Q9451_06535) radA 1478337..1479707 (+) 1371 WP_012274175.1 DNA repair protein RadA Machinery gene
  Q9451_RS06540 (Q9451_06540) - 1479815..1481332 (-) 1518 WP_012274174.1 nucleobase:cation symporter-2 family protein -
  Q9451_RS06545 (Q9451_06545) - 1481596..1481961 (-) 366 WP_012274173.1 PilZ domain-containing protein -
  Q9451_RS06550 (Q9451_06550) - 1482139..1484205 (+) 2067 WP_012274172.1 carbon starvation CstA family protein -
  Q9451_RS06555 (Q9451_06555) - 1484223..1484420 (+) 198 WP_003251633.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48767.21 Da        Isoelectric Point: 6.8985

>NTDB_id=868345 Q9451_RS06535 WP_012274175.1 1478337..1479707(+) (radA) [Pseudomonas sp. NY8896]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=868345 Q9451_RS06535 WP_012274175.1 1478337..1479707(+) (radA) [Pseudomonas sp. NY8896]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACGCTGGTCGAAACCATGATCGAAAGCGGCGGCGCCGCAGCGCCCAGCAGCGGCCGCGCGGGTTGGA
CCGGGCAGCAGGCACAGATCAAGACCTTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGCTTCACCACCAGCAGTACTGAA
CTGGACCGCGTACTGGGCGGTGGCCTGGTGGATGGCTCTGTGGTGCTGATTGGTGGTGACCCCGGTATCGGCAAGTCGAC
CATTTTGTTGCAAACGTTGTGCAACATCGCCGTCGGCATGCCGGCGCTGTATGTCACCGGTGAGGAGTCGCAGCAACAGG
TTGCCATGCGCTCACGGCGGCTGGGCCTGCCCCAGGACCAGCTCAAGGTAATGACCGAAACCTGCATCGAGACCATCATC
GCTACGGCACGCGTCGAGAAACCCAGGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGC
CCCCGGCGGCGTGGCCCAGGTGCGCGAAAGCACGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTGGAGCACATGGTCGATACCGTGCTGTATTTC
GAAGGCGAGTCCGATGGCCGTCTGCGCTTGTTACGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGTGGTCTTAAAGAAGTGTCCAACCCGTCGGCGATCTTCCTCAACCGTACCCAGGAAGAAGTGCCAG
GCAGCGTGGTAATGGCTACCTGGGAGGGCACCCGGCCAATGCTGGTTGAAGTGCAGGCGCTGGTCGACGATAGCCATCTG
GCCAATCCGCGGCGGGTAACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGTCATGGCGG
TATTCCTACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCGC
TGCTGGCGGCGGTCATGTCCAGCCTGCGCAATCGGCCGCTGGCCCATGGTCTGCTGGTGTTTGGCGAGATCGGCCTGTCG
GGTGAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAGCCACCGGCGGGGTTGCAGGTGATTGCCGTGACCCGGCTGGAGCAAGCCCTGGATGCAT
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W2CNH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461