Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RAB71_RS16195 Genome accession   NZ_CP132343
Coordinates   3865397..3866782 (-) Length   461 a.a.
NCBI ID   WP_010341150.1    Uniprot ID   A0A2P5Z111
Organism   Xanthomonas sacchari strain CFBP4641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3860397..3871782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS16180 (RAB71_16175) - 3861701..3862969 (+) 1269 WP_104609587.1 histidine-type phosphatase -
  RAB71_RS16185 (RAB71_16180) - 3863080..3864384 (+) 1305 WP_010341148.1 jacalin-like lectin -
  RAB71_RS16190 (RAB71_16185) - 3864822..3865247 (+) 426 WP_138985723.1 hypothetical protein -
  RAB71_RS16195 (RAB71_16190) radA 3865397..3866782 (-) 1386 WP_010341150.1 DNA repair protein RadA Machinery gene
  RAB71_RS16200 (RAB71_16195) - 3867218..3869107 (-) 1890 WP_029561850.1 M61 family metallopeptidase -
  RAB71_RS16205 (RAB71_16200) - 3869267..3870037 (-) 771 WP_029561851.1 SDR family NAD(P)-dependent oxidoreductase -
  RAB71_RS16210 (RAB71_16205) - 3870145..3870618 (+) 474 WP_234006545.1 MarR family winged helix-turn-helix transcriptional regulator -
  RAB71_RS16215 (RAB71_16210) cyoD 3870818..3871156 (-) 339 WP_010341155.1 cytochrome o ubiquinol oxidase subunit IV -
  RAB71_RS16220 (RAB71_16215) cyoC 3871156..3871782 (-) 627 WP_010341156.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48461.68 Da        Isoelectric Point: 7.4579

>NTDB_id=868302 RAB71_RS16195 WP_010341150.1 3865397..3866782(-) (radA) [Xanthomonas sacchari strain CFBP4641]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLSQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=868302 RAB71_RS16195 WP_010341150.1 3865397..3866782(-) (radA) [Xanthomonas sacchari strain CFBP4641]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAATACAACAAGTGGCAGGGCCAGTGCACCGAATG
CGGTGCCTGGAACACGTTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCCAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGCCTGGTGGAAGGCGCAGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAAACCGGCATC
GAGCACATCCTGCAGCATGCCAGCGCGGCGCGACCCAAGCTGATCGTCGCCGACTCGGTACAGACCCTGTGGACCGAGGC
GTTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGTA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGA
GCTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAACCCGTCTGCGATCTTCCTGTCCGGCGGCAGCG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGTTGGCGGTGCTGTCCTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGTCCCGTGCCCAACGGCGAGGACCGGCTGCGCGAGGCGGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCACGGTCAAGGGTATGGAAGTGATCGCGGTGGAGCGTTTGTCGC
AGGCATTGGAGGCGGCGAGCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5Z111

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.488
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425