Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RAB70_RS18685 Genome accession   NZ_CP132342
Coordinates   4451444..4452829 (-) Length   461 a.a.
NCBI ID   WP_017914782.1    Uniprot ID   A0AA46YAR3
Organism   Xanthomonas sontii strain PPL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4446444..4457829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS18675 (RAB70_18675) - 4448430..4449731 (+) 1302 WP_148829221.1 histidine-type phosphatase -
  RAB70_RS18680 (RAB70_18680) - 4449841..4451145 (+) 1305 WP_148829220.1 jacalin-like lectin -
  RAB70_RS18685 (RAB70_18685) radA 4451444..4452829 (-) 1386 WP_017914782.1 DNA repair protein RadA Machinery gene
  RAB70_RS18690 (RAB70_18690) - 4453136..4453672 (-) 537 WP_148829219.1 adenylate kinase -
  RAB70_RS18695 (RAB70_18695) - 4453898..4455787 (-) 1890 WP_408068845.1 M61 family metallopeptidase -
  RAB70_RS18700 (RAB70_18700) - 4455921..4456523 (-) 603 WP_148829218.1 ATP-dependent Clp protease proteolytic subunit -
  RAB70_RS18705 (RAB70_18705) - 4456579..4457397 (+) 819 WP_148829217.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48431.65 Da        Isoelectric Point: 7.4579

>NTDB_id=868285 RAB70_RS18685 WP_017914782.1 4451444..4452829(-) (radA) [Xanthomonas sontii strain PPL1]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNSLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=868285 RAB70_RS18685 WP_017914782.1 4451444..4452829(-) (radA) [Xanthomonas sontii strain PPL1]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAATACAACAAATGGCAGGGTCAGTGCACCGAATG
CGGCGCCTGGAACTCGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCGGGTTCGGTCAGCCAGGTGCGCGAGAGCGCCGCGCGCCTGGTGCGCTATGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTGTCCGGCGGCAGCG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCCCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCTTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.488
  radA Streptococcus mitis SK321

43.573

99.566

0.434
  radA Streptococcus pneumoniae D39

43.107

99.132

0.427
  radA Streptococcus pneumoniae TIGR4

43.107

99.132

0.427
  radA Streptococcus mitis NCTC 12261

43.107

99.132

0.427
  radA Streptococcus pneumoniae R6

43.107

99.132

0.427
  radA Streptococcus pneumoniae Rx1

43.107

99.132

0.427