Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q8L25_RS14555 Genome accession   NZ_CP132339
Coordinates   3214994..3216373 (+) Length   459 a.a.
NCBI ID   WP_308925494.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3209994..3221373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS14530 tsaB 3210409..3211122 (+) 714 WP_308925489.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  Q8L25_RS14535 rimI 3211122..3211595 (+) 474 WP_374694307.1 ribosomal protein S18-alanine N-acetyltransferase -
  Q8L25_RS14540 - 3211592..3212461 (+) 870 WP_308925491.1 uracil-DNA glycosylase -
  Q8L25_RS14545 - 3212445..3213380 (+) 936 WP_308925492.1 DUF1853 family protein -
  Q8L25_RS14550 lplT 3213460..3214722 (-) 1263 WP_308925493.1 lysophospholipid transporter LplT -
  Q8L25_RS14555 radA 3214994..3216373 (+) 1380 WP_308925494.1 DNA repair protein RadA Machinery gene
  Q8L25_RS14560 - 3216562..3216822 (+) 261 WP_374694274.1 PilZ domain-containing protein -
  Q8L25_RS14565 fliD 3216998..3218374 (+) 1377 WP_308925496.1 flagellar filament capping protein FliD -
  Q8L25_RS14570 - 3218416..3219225 (-) 810 WP_308925497.1 helix-turn-helix transcriptional regulator -
  Q8L25_RS14575 - 3219326..3220546 (+) 1221 WP_308925498.1 MFS transporter -
  Q8L25_RS14580 rraA 3220581..3221075 (+) 495 WP_308925499.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49118.60 Da        Isoelectric Point: 7.2493

>NTDB_id=868266 Q8L25_RS14555 WP_308925494.1 3214994..3216373(+) (radA) [Janthinobacterium sp. J1-1]
MAKAKTNYTCSDCGAISNKWMGQCTSCNQWNTMVETVADAAPGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIE
EFDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKI
LSTLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLY
FEGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSH
LPNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGL
AGEIRPAPRGQERLREAAKLGFTLAMIPKSNLPKQAIEGIKVIAVERIDEAFNKLRDHE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=868266 Q8L25_RS14555 WP_308925494.1 3214994..3216373(+) (radA) [Janthinobacterium sp. J1-1]
ATGGCCAAAGCCAAGACCAATTACACCTGCAGCGATTGCGGCGCCATCAGCAATAAATGGATGGGGCAGTGCACCTCCTG
CAATCAATGGAACACCATGGTGGAAACGGTGGCCGATGCGGCGCCCGGCAATAACCGCTATTCGAATCCGCAGCACATGT
CGCTGGCGCAAACGGCGCCGGTGCTGTCGCTCGACGATATCGACGCCATCGACGTGCCCCGTTTCGGCACCGGCATCGAG
GAATTCGACCGCGTGCTCGGTGGCGGCATGGTGGCTGGTGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCCTGCTGCTGCAGGCGCTGGCCAATATGTCGCACCACAAGCGCGTGCTGTATGTCAGCGGCGAGGAATCGGGCGCGC
AGATCGCCTTGCGCGCCAAGCGCCTGGTGATCGACGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAAATC
CTGTCCACCCTGAACGACCTGAAACCCGAAGTGGTGGTGATTGATTCGATCCAGACCGTGTACTCCGATGCGCTCAGCTC
GGCGCCCGGTTCGGTGGCGCAGGTGCGCGAATGCGCGGCCCAACTGACGCGCGCGGCCAAGCAGACCGGCGTGACCATCA
TCCTGGTCGGCCACGTGACCAAAGAAGGCGCACTGGCCGGCCCCCGCGTGCTGGAGCATATCGTCGACACCGTGCTGTAT
TTCGAAGGTGATGCCCATTCCAGCTTCCGCCTGGTGCGGGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGGGT
GTTTGCCATGACGGAGAAAGGCTTGAAGGGCGTGTCGAATCCCTCAGCCCTGTTCCTGTCGCAGCACGACAACCAGGTGC
CGGGCTCGTGCGTGATGGTGACGCAGGAGGGCACGCGCCCCTTGCTGGTGGAAATCCAGGCGCTGGTCGATACCAGCCAT
CTGCCGAACGCGCGCCGCCTGTCGGTCGGGCTGGAACAAAACCGCCTGGCCATGTTGCTGGCCGTGGCGCACCGCCATGC
GGGCATCGCCGCGTTTGACCAGGACGTCTTCATCAATGCGGTCGGTGGCGTGAAGATCACGGAACCGGCGGCCGACCTGG
CGGTCTTGCTGGCGATCAATTCATCGATGCGCAACAAACCCTTGCCGCGCGGCCTGGTGGTGTTTGGCGAAGTGGGGCTG
GCCGGTGAAATCCGCCCGGCGCCACGTGGCCAGGAACGCTTGCGCGAAGCTGCCAAGCTGGGCTTTACCCTGGCCATGAT
CCCAAAATCGAATTTGCCCAAGCAGGCGATCGAGGGTATCAAGGTGATTGCCGTCGAGCGCATCGACGAGGCGTTCAACA
AGCTGCGCGATCACGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-223)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-453)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.237

100

0.492
  radA Streptococcus pneumoniae Rx1

47.826

100

0.479
  radA Streptococcus pneumoniae D39

47.826

100

0.479
  radA Streptococcus pneumoniae R6

47.826

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.826

100

0.479
  radA Streptococcus mitis NCTC 12261

47.826

100

0.479
  radA Streptococcus mitis SK321

47.609

100

0.477