Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q8L25_RS05615 Genome accession   NZ_CP132339
Coordinates   1241072..1242130 (-) Length   352 a.a.
NCBI ID   WP_308923938.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236072..1247130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS05585 - 1236735..1237088 (+) 354 WP_308923933.1 antibiotic biosynthesis monooxygenase -
  Q8L25_RS05590 - 1237078..1237527 (-) 450 WP_308923934.1 hypothetical protein -
  Q8L25_RS05595 - 1237701..1237964 (+) 264 WP_308923935.1 hypothetical protein -
  Q8L25_RS05600 rpoH 1238030..1238920 (-) 891 WP_094443304.1 RNA polymerase sigma factor RpoH -
  Q8L25_RS05605 ftsX 1239398..1240318 (-) 921 WP_308923936.1 permease-like cell division protein FtsX -
  Q8L25_RS05610 - 1240315..1241058 (-) 744 WP_308923937.1 ATP-binding cassette domain-containing protein -
  Q8L25_RS05615 pilA 1241072..1242130 (-) 1059 WP_308923938.1 signal recognition particle-docking protein FtsY Machinery gene
  Q8L25_RS05620 - 1243561..1244661 (+) 1101 WP_308923939.1 porin -
  Q8L25_RS05625 - 1244817..1245374 (+) 558 WP_308923940.1 hypothetical protein -
  Q8L25_RS05630 - 1245384..1247081 (-) 1698 WP_308923941.1 thiamine pyrophosphate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37364.64 Da        Isoelectric Point: 8.3604

>NTDB_id=868258 Q8L25_RS05615 WP_308923938.1 1241072..1242130(-) (pilA) [Janthinobacterium sp. J1-1]
MFSFFKKKTASPEAAPVTVEPVIPAAPVAPPSQPGALSGAPAELVPVIVAAEPEKKSWMTRLKAGLSKTSNTLSVLFVGA
KIDDALYEELEAALLMSDAGIDATDYLLTALKKKVKEDKLLDAAAVKAALKVLLIDLLSPLEKRFELGRHKPLVMMISGV
NGAGKTTTIGKLAKHMQSNRQSVLLAAGDTFRAAAREQLMVWGERNNITVISQESGDPAAVAYDSVQSAKARSIDVVMVD
TAGRLPTQLHLMEELKKIKRVIGKGMEGAPHETLLVIDGNTGQNALTQVKAFDDALQLSGLVITKLDGTAKGGVLAAIAR
VRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=868258 Q8L25_RS05615 WP_308923938.1 1241072..1242130(-) (pilA) [Janthinobacterium sp. J1-1]
ATGTTTAGTTTCTTCAAGAAAAAAACCGCCTCTCCCGAGGCAGCGCCCGTCACCGTCGAACCTGTCATTCCTGCCGCCCC
GGTGGCACCGCCGTCCCAGCCTGGCGCCCTGTCCGGCGCGCCGGCCGAACTGGTACCCGTGATCGTGGCCGCCGAGCCGG
AAAAGAAATCGTGGATGACGCGCCTGAAGGCCGGCCTGTCGAAAACCTCGAATACCCTGTCGGTACTGTTTGTCGGCGCC
AAGATCGACGACGCCCTGTATGAAGAGCTGGAAGCGGCGCTGCTGATGTCCGACGCCGGCATCGACGCCACCGATTACCT
GCTGACGGCCCTGAAAAAGAAAGTCAAGGAAGACAAGCTGCTCGACGCCGCCGCCGTCAAGGCCGCCTTGAAAGTGCTGC
TGATCGATCTCTTGAGTCCGCTGGAAAAACGTTTCGAACTGGGCCGCCACAAGCCGCTGGTGATGATGATCTCGGGCGTC
AACGGCGCCGGCAAGACCACCACCATTGGCAAGCTCGCCAAGCACATGCAGTCGAACCGGCAATCGGTGCTGCTGGCCGC
CGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGATGGTCTGGGGCGAGCGCAACAACATTACCGTGATCTCGCAGG
AATCGGGCGACCCGGCCGCCGTGGCCTACGACTCGGTGCAGTCGGCCAAGGCGCGCTCAATCGACGTGGTGATGGTCGAC
ACGGCGGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTGAAAAAGATCAAGCGCGTGATCGGCAAGGGCATGGA
AGGCGCGCCGCATGAAACCTTGCTGGTGATTGACGGCAATACGGGCCAGAATGCGCTGACGCAAGTCAAGGCGTTCGACG
ACGCCCTGCAGCTGAGCGGCCTGGTGATTACCAAGCTCGACGGTACCGCCAAGGGCGGCGTGCTGGCGGCGATCGCCCGC
GTGCGTCCGGTGCCCGTGTATTTCATCGGCATCGGTGAAAAAATTGAAGACTTGCAGCCTTTCGTGGCTGCCGAATTTGT
CGAAGCCTTGCTCGGATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(71-131)

SRP54-type protein, GTPase domain (SRP54)

(153-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.413

90.057

0.517