Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   Q8L25_RS03725 Genome accession   NZ_CP132339
Coordinates   829806..831284 (+) Length   492 a.a.
NCBI ID   WP_308923600.1    Uniprot ID   -
Organism   Janthinobacterium sp. J1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 824806..836284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS03705 - 826777..827787 (+) 1011 WP_308923596.1 KpsF/GutQ family sugar-phosphate isomerase -
  Q8L25_RS03710 lptC 827839..828444 (+) 606 WP_308923597.1 LPS export ABC transporter periplasmic protein LptC -
  Q8L25_RS03715 lptA 828465..829043 (+) 579 WP_308923598.1 lipopolysaccharide transport periplasmic protein LptA -
  Q8L25_RS03720 lptB 829043..829801 (+) 759 WP_308923599.1 LPS export ABC transporter ATP-binding protein -
  Q8L25_RS03725 rpoN/rpoN1 829806..831284 (+) 1479 WP_308923600.1 RNA polymerase factor sigma-54 Machinery gene
  Q8L25_RS03730 hpf 831353..831712 (+) 360 WP_065310093.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Q8L25_RS03735 rapZ 831794..832657 (-) 864 WP_308923601.1 RNase adapter RapZ -
  Q8L25_RS03740 hprK 832816..833751 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  Q8L25_RS03745 - 833788..834270 (-) 483 WP_308923602.1 PTS sugar transporter subunit IIA -
  Q8L25_RS03750 queF 834615..835457 (-) 843 WP_308923603.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54427.92 Da        Isoelectric Point: 5.0356

>NTDB_id=868253 Q8L25_RS03725 WP_308923600.1 829806..831284(+) (rpoN/rpoN1) [Janthinobacterium sp. J1-1]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPGEAPPAPP
GQEAPAPAAEAESFDGDGGESTAASEGGDSDWNEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEEPLDDILARLPEELEVDADELRTALSLLQSFDPAGVGARNASECLALQIKRLPQVALVTRRMALNIVE
KHLTWFAQRDFNKLKKALDCDDEDLREAQTVIRLCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVSLNNDVMPRLRVNA
MYANLLKQGKGEGGMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKDFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAENPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=868253 Q8L25_RS03725 WP_308923600.1 829806..831284(+) (rpoN/rpoN1) [Janthinobacterium sp. J1-1]
ATGAAACAATCCCTGCAACTGCGCACCTCGCAGCACCTGGCACTGACGCCGCAATTACAGCAATCGATACGCCTGCTGCA
ACTGTCCACGCTGGAATTGCACCAGGAGCTGGAGCAATTGCTGACCGATAATCCCTTGCTGGAACGGCTCGACGATCCGC
TCGACCGCTCGCTGCGCCTGCTGTCCGATGGCGCCCTGAGTTCGACCGCCGCCCCCGGCGAAGCGCCACCGGCGCCGCCG
GGCCAGGAAGCGCCGGCGCCAGCCGCCGAAGCGGAGTCGTTTGACGGCGATGGCGGCGAGAGCACGGCCGCGTCCGAGGG
CGGCGACAGCGACTGGAACGAGGCCAGCCGCGGCAAGGCGCCCGATGACGAGGATTCCCGTCCGCAACTGGAGGCCCATC
ACTGCACCTTGCGCGAACACCTGATGGAACAGATGCGCGTGACCGTGCTGGAGCTGCGCGACCGCGCGCTGGTGGAATTG
ATCATCGATGCGCTCGACGACAATGGCTACCTGGAAGAGCCGCTCGACGATATCCTGGCGCGCCTGCCGGAAGAACTGGA
AGTCGATGCGGATGAGCTGCGCACGGCGCTGTCGCTGCTGCAAAGTTTCGACCCTGCCGGCGTGGGTGCGCGCAATGCGT
CCGAATGCCTGGCGCTGCAGATCAAACGCTTGCCGCAGGTGGCGCTGGTGACGCGGCGCATGGCCTTGAACATCGTCGAG
AAACACCTGACCTGGTTCGCCCAGCGCGACTTCAACAAGCTCAAGAAAGCCCTCGACTGCGACGATGAAGACTTGCGCGA
AGCACAGACCGTGATTCGCTTGTGCAACCCGCATCCGGGCGCCGTGTTCGCTTCCGACGTGTCCGATTACGTGGTGCCGG
ACGTGGTGGTCAAGCGGGCCCGCAATGGCTGGCAGGTATCGCTCAACAATGACGTCATGCCGCGCCTGCGCGTGAACGCC
ATGTACGCCAACCTGCTCAAGCAGGGCAAGGGCGAAGGCGGCATGGGTGCGCAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAACATGCGCCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGTGGAACGGCAAAAGGATTTTTTCTCGCACG
GCGCAGTTGCCATGCGGCCACTTGTGCTTCGCGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACCCAAAAGTACATGCTGACCCCGCATGGAATGTTTGAGTTGAAGTATTTCTTTGGCAGCCACGTCGCCACCGAAGC
AGGAGGGGAGGCGTCATCGACGGCGATACGGGCCTTGATCGTGCAATTGACAGGAGCAGAGAACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGTCTGCGTAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.558

100

0.618